Resources and tools of 3D reconstructions of neuron morphology: Unabridged collection of essential pointers and literature references, originally published here.

	Resource	Platform	Support	Reference	Lead	Web Address
Tracing	Neurolucida*	W	EFGTDA	Glaser & Glaser 1990	J.Glaser	mbfbioscience.com/neurolucida
	Aivia / AiviaWeb	WM (CO)	EFGNTDA	Graff et al 2019	L.A.G Lucas	https://www.drvtechnologies.com/aivia-neuro
	Filament Tracer*	WM	ETDA	N/A	M.Messerli	www.bitplane.com/go/products/filamenttracer
	Amira*	WML	EGDA	N/A	S.Hupert	www.fei.com/software/amira-extensions
	Neuron 3DMA*	L	DA	Koh et al 2002	W.Lindquist	www.ams.sunysb.edu/~lindquis/3dma/3dma_neuron/3dma_neuron.html
	NeuronJ**	WML	GNDA	Meijering et al 2004	E.Meijering	imagescience.org/meijering/software/neuronj
	NeuRA**	M	G	Broser et al 2004	G. Wittum	neura.org
	NeuronStudio**	W	EGA	Wearne et al 2005	A.Rodriguez	research.mssm.edu/cnic/tools-ns.html
	ORION**	WL	FGDA	Losavia et al 2008	I.Kakadiaris	cbl.uh.edu/ORION
	Neuron_Morpho	WM (I)	GN	Brown et al 2005	G.D’Alessandro	www.personal.soton.ac.uk/dales/morpho
	Farsight	WML (C)	LTDA	Wang et al 2011	B.Roysam	farsight-toolkit.org/wiki/Open_Snake_Tracing_System
	Trees Toolbox	WML (O)	EGTDA	Cuntz et al 2011	H.Cuntz	treestoolbox.org
	Vaa3D	WML (C)	FGTDA	Peng et al 2010	H.Peng	Vaa3D.org
	Simple Neurite Tracer	WML (I)	EGLTDA	Longair et al 2011	M.Longair	pacific.mpi-cbg.de/wiki/index.php/Simple_Neurite_Tracer
	Neuromantic	W	ETDA	Myatt et al 2012	D.Myatt	reading.ac.uk/neuromantic/body_index.php
	KNOSSOS-EM and LM reconstruction	WL	EGTDA	Helmstaedter et al 2014	J.Kornfeld, F. Svara	www.knossostool.org
	Filament Editor	WL	E	Vincent et al 2014	H. Hege	www.zib.de/en/visual/software/neuronreconstruction.html
	neuTube	MWL	GTDA	Feng et al 2014	T. Zhao, L. Feng	neutracing.com
	Neural Circuit Tracer	W	EGT	Gala et al 2014	A. Stepanyants	neurogeometry.net
	VolRoverN	M	EGTD	Edwards et al 2014	C.Bajaj	cvcweb.ices.utexas.edu/cvcwp/?page_id=2089
	WIS-NeuroMath	W	EGT	Rishal et al 2013	M.Galun	www.weizmann.ac.il/vet/IC/software/wis-neuromath
	Volumetric RGC	WML (O)	EG	Sümbül et al 2014	U.Sümbül	github.com/uygarsumbul/rgc
	Tubular Geodesics	LM	ETA	Türetken et al 2013	E.Turetken	cvlab.epfl.ch/research/medical/lm#software
Tubularity Flow Field**	WM (O)	EDA	Mukherjee et al 2015	Scot T. Acton	viva-lab.ece.virginia.edu/suvadip_docs/Neuron/research_neuron.html
Analysis	Neurolucida Explorer*	W	EFGTDA	Glaser & Glaser 1990	J.Glaser	mbfbioscience.com/neurolucida
	Neuronland**	WM	GLDA	N/A	J.Ogden	neuronland.org/NL.html
	Cvapp	WM (J)	G	Cannon et al 1998	R.Cannon	neuron.duke.edu/cells/download.html
	L-Measure	WML (CJ)	FGDA	Scorcioni et al 2008	G.Ascoli	cng.gmu.edu:8080/Lm
	4D SPA	WM	EGT	Lee et al 2013	P.Lee, H.He	people.cs.nctu.edu.tw/~percycat/4DSPA
	Dendrite Length Quantifier	WML	EGT	Smafield et al 2015	Zhou Group	faculty.cs.niu.edu/~zhou/tool/dlq
	NEMO	W	E	Billeci et al 2010	B.Lucia, M.Chiara, G.Pioggia, A.Ahluwalia	www.centropiaggio.unipi.it/content/nemo-neuron-morphological-analysis-tool
	Py3DN	WL	EDA	Aguiar et al 2013	P.Aguiar	sourceforge.net/projects/py3dn
	btmorph	WML(O)	GTA	Torben-Nielsen et al 2014	B.Torben-Nielsen	btmorph.readthedocs.org/en/latest
	Bonfire	WML(O)	EG	Langhammer et al 2010	B.Firestein	firesteinlab.cbn.rutgers.edu/tools.html
	NeuroM	WML(O)	EGTA	Shillcock et al 2016	G.Shillcock	github.com/BlueBrain/NeuroM
Computational modeling	L-Neuron ***	WL (C)	GNA	Ascoli et al 2001	G.Ascoli	krasnow1.gmu.edu/cn3/L-Neuron
	NeuGen ***	WML (CJ)	GNDA	Eberhard et al 2006	G.Wittum	neugen.org
	NetMorph ***	WML (C)	GNDA	Koene et al 2009	A.van Ooyen	netmorph.org
	CX3D ***	WM (J)	FT	Zubler & Douglas 2009	A.Hauri	www.ini.uzh.ch/~amw/seco/cx3d
	NEURON	WML (C)	FGLTDA	Hines & Carnevale 1997	M.Hines	www.neuron.yale.edu/neuron
	GENESIS	WML (C)	FGLTDA	Bower & Beeman 1998	J.Bower	genesis-sim.org
	NeuronC	ML (C)	GNDA	Smith 1992	R.Smith	retina.anatomy.upenn.edu/~rob/neuronc.html
	Surf-Hippo	L (O)	GL	Borg-Graham 2000	L.Borg-Graham	surf-hippo.neurophysics.eu
	Catacomb**	WML	GNDA	Cannon et al 2003	M.Hasselmo	catacomb.org
	neuroConstruct	WML (J)	GTNDA	Gleeson et al 2007	A.Silver	neuroconstruct.org
	Moose	WML (O)	FGDA	Ray & Bhalla, 2008	U.Bhalla	moose.ncbs.res.in
	PSICS	WML (JO)	EFGDA	Cannon et al 2010	M.Nolan	psics.org
	N2A	W	EGDA	Rothganger et al 2014	F.Rothganger	code.google.com/p/n2a/wiki/Installation
	morphforge***	W	EGLDA	Hull et al 2014	M.Hull	morphforge.readthedocs.org/en/latest
	NeuroMac***	WML (P)	EDA	Torben-Nielsen et al 2014	B.Torben-Nielsen	groups.oist.jp/cnu/neuromac
	REMOD	WML(O)	E	Bozelos et al 2015	Y.Poirazi	remod.gr
Database	NeuroMorpho.Org	WML	EGDA	Ascoli et al 2007	G.Ascoli	neuromorpho.org
	CCDB	WML	GLDA	Martone et al 2008	M.Martone	ccdb.ucsd.edu
	Fly Circuit	WML	EGT	Chiang et al 2011	A-S.Chiang	flycircuit.tw

Resource: *Commercial; **Free, not open source; Free; ***morphological modeling (as opposed to electrophysiological)
Platform: W: Windows; M: Mac; L: Linux; (C: C/C++; J: Java; I: ImageJ plugin; O: Others, i.e. Matlab, Python, Lisp or Fortran)
Support: E: E-mail; F: Forum; G: Guide (Manual); L: mailing List; N: Newsletter; T: Tutorial; D: ongoing Development; A: Actively maintained