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| Details about selected cell |
| NeuroMorpho.Org ID : | NMO_05755 |
| Cell Name : | sn5gnx |
| Archive Name : | Mailly |
| Species Name : | rat |
| Strain : | Sprague-Dawley |
| Structural Domains : | Dendrites, Soma, Axon |
| Physical Integrity : | Dendrites Complete, Axon Moderate |
| Morphological Attributes : | Diameter, 3D, Angles |
| Min Age : | 55.0 days
|
| Max Age : | 55.0 days
|
| Gender : |
Male
|
| Min Weight : | 250 grams
|
| Max Weight : | 350 grams
|
| Development : | adult |
| Primary Brain Region : | basal ganglia |
| Secondary Brain Region : | substantia nigra |
| Tertiary Brain Region : | Not reported |
| Primary Cell Class : | principal cell |
| Secondary Cell Class : | dopaminergic |
| Tertiary Cell Class : | Not reported |
| Original Format : | Neurolucida.asc |
| Experiment Protocol : | in vivo |
| Experimental Condition : | Control |
| Staining Method : | Neurobiotin |
| Slicing Direction : | custom |
| Slice Thickness : | 60
μm |
| Tissue Shrinkage : |
Reported (no values given)
Corrected (no values given)
|
| Objective Type : | oil |
| Magnification : | 25x |
| Reconstruction Method : | Neurolucida |
| Date of Deposition : | 2009-09-18 |
| Date of Upload : | 2010-11-05 |
| Persistence Vector : | sn5gnx.pvec |
| Note : | Slicing direction-Dorsoventral at level of the cerebellum along a vertical plane tilted 18 degrees toward the rostral part of the brain. Tissue shrinkage - Shrinkage only in z not in xy |
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| Reference Articles |
| Primary Article Reference : | Three-dimensional organization of the recurrent axon collateral network of the substantia nigra pars reticulata neurons in the rat. |
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| Secondary Article Reference : | Dendritic arborizations of the rat substantia nigra pars reticulata neurons: spatial organization and relation to the lamellar compartmentation of striato-nigral projections. |
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| Measurements |
| Soma Surface : |
2699.59 μm2 |
| Number of Stems : |
4 |
| Number of Bifurcations : |
50 |
| Number of Branches : |
104 |
| Overall Width : |
891.45 μm |
| Overall Height : |
1467.09 μm |
| Overall Depth : |
556.9 μm |
| Average Diameter : |
1.88 μm |
| Total Length : |
14932.2 μm |
| Total Surface : |
90504.7 μm2 |
| Total Volume : |
48818 μm3 |
| Max Euclidean Distance : |
1139.35 μm |
| Max Path Distance : |
3401.34 μm |
| Max Branch Order : |
6 |
| Average Contraction : |
0.65 |
| Total Fragmentation : |
2283 |
| Partition Asymmetry : |
0.42 |
| Average Rall's Ratio : |
1.8 |
| Average Bifurcation Angle Local : |
81.13° |
| Average Bifurcation Angle Remote : |
69.53° |
| Fractal Dimension : |
1.05 |
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