8.6.82 - Released: 2025-05-21 - Content: 275062 cells
Morphology File (Standardized)
Morphology File (Original)
Log File (Standardized)
Log File (Original)



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NeuroMorpho.Org ID :  NMO_64475
Cell Name :  segm_4022
Archive Name :  Denk
Species Name :  mouse
Strain :  C57BL/6
Structural Domains :  Neurites, No Soma
Physical Integrity :  Neurites Moderate
Morphological Attributes :  Diameter, 3D, Angles
Min Age :  30.0 days
Max Age :  30.0 days
Gender :  Not reported
Min Weight :  Not reported
Max Weight :  Not reported
Development :  young adult
Primary Brain Region :  retina
Secondary Brain Region :  Not reported
Tertiary Brain Region :  Not reported
Primary Cell Class :  Not reported
Secondary Cell Class :  Not reported
Tertiary Cell Class :  Not reported
Original Format :  Knossos.swc
Experiment Protocol :  in vitro
Experimental Condition :  Control
Staining Method :  osmium and lead citrate
Slicing Direction :  Not reported
Slice Thickness :  0.025  μm
Tissue Shrinkage :  Reported 14%
Corrected (no values given)
Objective Type :  electron microscopy
Magnification :  Not reported
Reconstruction Method :  Knossos
Date of Deposition :  2015-01-10
Date of Upload :  2017-07-19
Persistence Vector :  segm_4022.pvec
Note :  "Orphan" cells; converted to SWC by jefferislab.org/si/nblast

Reference Article
Related Article Reference :  Connectomic reconstruction of the inner plexiform layer in the mouse retina.

Measurements
Soma Surface :  N/A
Number of Stems :  2
Number of Bifurcations :  36
Number of Branches :  74
Overall Width :  5.6 μm
Overall Height :  58.23 μm
Overall Depth :  9.84 μm
Average Diameter :  1.51 μm
Total Length :  247.64 μm
Total Surface :  1166.99 μm2
Total Volume :  437.62 μm3
Max Euclidean Distance :  43.64 μm
Max Path Distance :  75.04 μm
Max Branch Order :  23
Average Contraction :  0.81
Total Fragmentation :  552
Partition Asymmetry :  0.76
Average Rall's Ratio :  1.95
Average Bifurcation Angle Local :  100.29°
Average Bifurcation Angle Remote :  93.44°
Fractal Dimension :  1.19

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