8.6.82 - Released: 2025-05-21 - Content: 275062 cells
Morphology File (Standardized)
Morphology File (Original)
Log File (Standardized)
Log File (Original)



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NeuroMorpho.Org ID :  NMO_161200
Cell Name :  new18331_05_gzy_rw_c
Archive Name :  Ruiyu
Species Name :  mouse
Strain :  DAT-Cre
Structural Domains :  No Dendrites, No Soma, Axon
Physical Integrity :  Axon Moderate
Morphological Attributes :  No Diameter, 3D, Angles
Min Age :  4.0 months
Max Age :  4.0 months
Gender :  Male
Min Weight :  Not reported
Max Weight :  Not reported
Development :  adult
Primary Brain Region :  brainstem
Secondary Brain Region :  raphe nuclei
Tertiary Brain Region :  dorsal
Primary Cell Class :  principal cell
Secondary Cell Class :  dopaminergic
Tertiary Cell Class :  Not reported
Original Format :  Amira.swc
Experiment Protocol :  in vivo
Experimental Condition :  Control
Staining Method :  AAV2-EF1a-DIO-mGFP
Slicing Direction :  Not applicable
Slice Thickness :  Not applicable
Tissue Shrinkage :  Not reported
Objective Type :  dry
Magnification :  10x
Reconstruction Method :  Amira
Date of Deposition :  2021-05-17
Date of Upload :  2021-08-04
Persistence Vector :  new18331_05_gzy_rw_c.pvec
Note :  The following coordinates were used to target specific brain areas: 5.0 mm posterior to the bregma and 2.5 mm ventral to the skull surface with a 15 degrees angle (posterior to anterior) for the dorsal raphe (DRN). Mice were sacrificed and perfused 3 weeks after virus injection.

Reference Article
Related Article Reference :  The Raphe Dopamine System Controls the Expression of Incentive Memory.

Measurements
Soma Surface :  N/A
Number of Stems :  2
Number of Bifurcations :  119
Number of Branches :  240
Overall Width :  1750.82 μm
Overall Height :  5901.98 μm
Overall Depth :  833.79 μm
Average Diameter :  1.76 μm
Total Length :  29774.5 μm
Total Surface :  140875 μm2
Total Volume :  65036 μm3
Max Euclidean Distance :  5797.73 μm
Max Path Distance :  11426.8 μm
Max Branch Order :  33
Average Contraction :  0.83
Total Fragmentation :  17264
Partition Asymmetry :  0.67
Average Rall's Ratio :  5.15
Average Bifurcation Angle Local :  65.27°
Average Bifurcation Angle Remote :  77.18°
Fractal Dimension :  1.05

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