8.6.79 - Released: 2025-04-16 - Content: 273841 cells
Morphology File (Standardized)
Morphology File (Original)
Log File (Standardized)
Log File (Original)



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Details about selected cell
NeuroMorpho.Org ID :  NMO_82990
Cell Name :  YH275_03
Archive Name :  Han_etal
Species Name :  mouse
Strain :  C57BL/6
Structural Domains :  No Dendrites, Soma, Axon
Physical Integrity :  Axon Complete
Morphological Attributes :  No Diameter, 3D, Angles
Min Age :  2.0 months
Max Age :  2.0 months
Gender :  Male/Female
Min Weight :  Not reported
Max Weight :  Not reported
Development :  adult
Primary Brain Region :  neocortex
Secondary Brain Region :  occipital
Tertiary Brain Region :  primary visual, layer 2-3
Primary Cell Class :  principal cell
Secondary Cell Class :  pyramidal
Tertiary Cell Class :  Not reported
Original Format :  Custom.swc
Experiment Protocol :  in vivo
Experimental Condition :  Control
Staining Method :  green fluorescent protein
Slicing Direction :  coronal
Slice Thickness :  45  μm
Tissue Shrinkage :  Not reported
Objective Type :  water
Magnification :  16x
Reconstruction Method :  Custom
Date of Deposition :  2017-10-31
Date of Upload :  2018-04-16
Persistence Vector :  YH275_03.pvec
Note :  In the Morphology File (Original) data, rostral is to the right and medial towards the bottom. The cell-by-cell locations and orientations of the original data relative to the mouse brain atlas are available here

Reference Article
Related Article Reference :  The logic of single-cell projections from visual cortex.

Measurements
Soma Surface :  12.47 μm2
Number of Stems :  1
Number of Bifurcations :  99
Number of Branches :  199
Overall Width :  4232.32 μm
Overall Height :  6077.32 μm
Overall Depth :  1442.08 μm
Average Diameter :  2 μm
Total Length :  62253.6 μm
Total Surface :  391151 μm2
Total Volume :  195575 μm3
Max Euclidean Distance :  6032.13 μm
Max Path Distance :  7378.56 μm
Max Branch Order :  25
Average Contraction :  0.84
Total Fragmentation :  3228
Partition Asymmetry :  0.55
Average Rall's Ratio :  2
Average Bifurcation Angle Local :  69.17°
Average Bifurcation Angle Remote :  74.6°
Fractal Dimension :  1.03

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