8.6.96 - Released: 2025-11-05 - Content: 284158 cells
Morphology File (Standardized)
Morphology File (Original)
Log File (Standardized)
Log File (Original)



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NeuroMorpho.Org ID :  NMO_158995
Cell Name :  WT0601-Ect-R-8451-fiber03
Archive Name :  Zhang_Jiang
Species Name :  mouse
Strain :  C57BL/6
Structural Domains :  Dendrites, Soma, No Axon
Physical Integrity :  Dendrites Complete
Morphological Attributes :  No Diameter, 3D, Angles
Min Age :  6.0 months
Max Age :  6.0 months
Gender :  Male
Min Weight :  Not reported
Max Weight :  Not reported
Development :  adult
Primary Brain Region :  entorhinal cortex
Secondary Brain Region :  right
Tertiary Brain Region :  Not reported
Primary Cell Class :  principal cell
Secondary Cell Class :  pyramidal
Tertiary Cell Class :  Not reported
Original Format :  Amira.swc
Experiment Protocol :  in vitro
Experimental Condition :  Control
Staining Method :  Golgi-Cox
Slicing Direction :  coronal
Slice Thickness :  50  μm
Tissue Shrinkage :  Not reported
Objective Type :  Not reported
Magnification :  40x
Reconstruction Method :  Amira
Date of Deposition :  2020-01-31
Date of Upload :  2021-07-16
Persistence Vector :  WT0601-Ect-R-8451-fiber03.pvec
Note :  A block size of 600 x 600 x 600 cubic micrometers was chosen in the brain for statistical analysis of the parameters of neuronal morphology. The position of the entorhinal cortex was located in the following stereotaxic coordinates: Bregma, -4.04; -5.02 mm.

Reference Article
Related Article Reference :  Dendritic complexity change in the triple transgenic mouse model of Alzheimer's disease.

Measurements
Soma Surface :  233.05 μm2
Number of Stems :  6
Number of Bifurcations :  8
Number of Branches :  22
Overall Width :  94.83 μm
Overall Height :  166.23 μm
Overall Depth :  27.69 μm
Average Diameter :  0.44 μm
Total Length :  660.99 μm
Total Surface :  900.46 μm2
Total Volume :  128.18 μm3
Max Euclidean Distance :  127.31 μm
Max Path Distance :  138.26 μm
Max Branch Order :  4
Average Contraction :  0.92
Total Fragmentation :  427
Partition Asymmetry :  0.62
Average Rall's Ratio :  3.34
Average Bifurcation Angle Local :  47.39°
Average Bifurcation Angle Remote :  77.69°
Fractal Dimension :  1.03

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