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| Details about selected cell |
| NeuroMorpho.Org ID : | NMO_37786 |
| Cell Name : | VD130423-IDC |
| Archive Name : | Markram |
| Species Name : | rat |
| Strain : | Han Wistar |
| Structural Domains : | Dendrites, Soma, Axon |
| Physical Integrity : | Dendrites Complete, Axon Moderate |
| Morphological Attributes : | No Diameter, 3D, Angles |
| Min Age : | 14.0 days
|
| Max Age : | 14.0 days
|
| Gender : |
Male
|
| Min Weight : | Not reported
|
| Max Weight : | Not reported
|
| Development : | young |
| Primary Brain Region : | neocortex |
| Secondary Brain Region : | somatosensory |
| Tertiary Brain Region : | layer 2-3 |
| Primary Cell Class : | principal cell |
| Secondary Cell Class : | pyramidal |
| Tertiary Cell Class : | Not reported |
| Original Format : | Neurolucida.asc |
| Experiment Protocol : | in vitro |
| Experimental Condition : | Control |
| Staining Method : | biocytin |
| Slicing Direction : | parasagittal |
| Slice Thickness : | 200
μm |
| Tissue Shrinkage : |
Reported 10% in xy, 25% in z
Corrected (no values given)
|
| Objective Type : | water or oil |
| Magnification : | 60x |
| Reconstruction Method : | Neurolucida |
| Date of Deposition : | 2015-03-06 |
| Date of Upload : | 2016-03-04 |
| Persistence Vector : | VD130423-IDC.pvec |
| Note : | Tissue shrinkage - corrected only in z-axis |
|
|
| Reference Article |
| Related Article Reference : | The blue brain project. |
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|
| Measurements |
| Soma Surface : |
2225.02 μm2 |
| Number of Stems : |
8 |
| Number of Bifurcations : |
138 |
| Number of Branches : |
284 |
| Overall Width : |
1613.08 μm |
| Overall Height : |
1720.94 μm |
| Overall Depth : |
175.93 μm |
| Average Diameter : |
0.75 μm |
| Total Length : |
25106.2 μm |
| Total Surface : |
57978.5 μm2 |
| Total Volume : |
23009.4 μm3 |
| Max Euclidean Distance : |
1396.74 μm |
| Max Path Distance : |
1923.59 μm |
| Max Branch Order : |
19 |
| Average Contraction : |
0.84 |
| Total Fragmentation : |
13009 |
| Partition Asymmetry : |
0.49 |
| Average Rall's Ratio : |
1.3 |
| Average Bifurcation Angle Local : |
87.26° |
| Average Bifurcation Angle Remote : |
60.15° |
| Fractal Dimension : |
1.05 |
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