8.6.96 - Released: 2025-11-05 - Content: 284158 cells
Morphology File (Standardized)
Morphology File (Original)
Log File (Standardized)
Log File (Original)



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NeuroMorpho.Org ID :  NMO_170693
Cell Name :  TRN-1-cer-488-iba1-594-3-3
Archive Name :  Xiong
Species Name :  mouse
Strain :  C57BL/6J
Structural Domains :  Processes, No Soma
Physical Integrity :  Processes Moderate
Morphological Attributes :  No Diameter, 2D, Angles
Min Age :  3.0 months
Max Age :  5.0 months
Gender :  Male/Female
Min Weight :  20 grams
Max Weight :  30 grams
Development :  adult
Primary Brain Region :  ventral thalamus
Secondary Brain Region :  thalamic reticular nucleus
Tertiary Brain Region :  Not reported
Primary Cell Class :  Glia
Secondary Cell Class :  microglia
Tertiary Cell Class :  Iba1-positive
Original Format :  NeuronJ.ndf
Experiment Protocol :  in vitro
Experimental Condition :  C2-ceramide injection
Staining Method :  immunostaining
Slicing Direction :  coronal
Slice Thickness :  60  μm
Tissue Shrinkage :  Not reported
Objective Type :  oil
Magnification :  60x
Reconstruction Method :  NeuronJ
Date of Deposition :  2021-09-08
Date of Upload :  2021-12-14
Persistence Vector :  TRN-1-cer-488-iba1-594-3-3.pvec
Note :  For i.c.v. injections of ceramide, a craniotomy was made over the lateral ventricle (AP: -0.4 mm; ML: 1.1 mm), and 5 microliters of C2-ceramide (293 micromolar) was delivered via glass pipette 2 mm below the cortical surface as described above.

Reference Article
Related Article Reference :  Microglia modulate stable wakefulness via the thalamic reticular nucleus in mice.

Measurements
Soma Surface :  N/A
Number of Stems :  1
Number of Bifurcations :  12
Number of Branches :  25
Overall Width :  158.43 μm
Overall Height :  80.84 μm
Overall Depth :  0 μm
Average Diameter :  1 μm
Total Length :  495.8 μm
Total Surface :  1557.59 μm2
Total Volume :  389.4 μm3
Max Euclidean Distance :  176.39 μm
Max Path Distance :  284.25 μm
Max Branch Order :  10
Average Contraction :  0.96
Total Fragmentation :  91
Partition Asymmetry :  0.75
Average Rall's Ratio :  2
Average Bifurcation Angle Local :  80.39°
Average Bifurcation Angle Remote :  84.44°
Fractal Dimension :  1.02

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