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| Details about selected cell |
| NeuroMorpho.Org ID : | NMO_37468 |
| Cell Name : | TKB061009A2-CH2-CC1-N-DB-100X-1 |
| Archive Name : | Markram |
| Species Name : | rat |
| Strain : | Han Wistar |
| Structural Domains : | Dendrites, Soma, Axon |
| Physical Integrity : | Dendrites Complete, Axon Moderate |
| Morphological Attributes : | No Diameter, 3D, Angles |
| Min Age : | 14.0 days
|
| Max Age : | 14.0 days
|
| Gender : |
Male
|
| Min Weight : | Not reported
|
| Max Weight : | Not reported
|
| Development : | young |
| Primary Brain Region : | neocortex |
| Secondary Brain Region : | somatosensory |
| Tertiary Brain Region : | layer 6 |
| Primary Cell Class : | Not reported |
| Secondary Cell Class : | Not reported |
| Tertiary Cell Class : | Not reported |
| Original Format : | Neurolucida.asc |
| Experiment Protocol : | in vitro |
| Experimental Condition : | Control |
| Staining Method : | biocytin |
| Slicing Direction : | parasagittal |
| Slice Thickness : | 200
μm |
| Tissue Shrinkage : |
Reported 10% in xy, 25% in z
Corrected (no values given)
|
| Objective Type : | water or oil |
| Magnification : | 60x |
| Reconstruction Method : | Neurolucida |
| Date of Deposition : | 2015-03-06 |
| Date of Upload : | 2016-03-04 |
| Persistence Vector : | TKB061009A2-CH2-CC1-N-DB-100X-1.pvec |
| Note : | Tissue shrinkage - corrected only in z-axis. Two separate dendritic trees are labeled as 'apical' in the original file. |
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| Reference Articles |
| Primary Article Reference : | Brief bursts self-inhibit and correlate the pyramidal network. |
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| Secondary Article Reference : | Frequency-dependent disynaptic inhibition in the pyramidal network: a ubiquitous pathway in the developing rat neocortex. |
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| Measurements |
| Soma Surface : |
676.14 μm2 |
| Number of Stems : |
7 |
| Number of Bifurcations : |
38 |
| Number of Branches : |
83 |
| Overall Width : |
489.68 μm |
| Overall Height : |
620.75 μm |
| Overall Depth : |
178.41 μm |
| Average Diameter : |
0.46 μm |
| Total Length : |
5914.05 μm |
| Total Surface : |
8344.99 μm2 |
| Total Volume : |
1082.48 μm3 |
| Max Euclidean Distance : |
632.64 μm |
| Max Path Distance : |
826.06 μm |
| Max Branch Order : |
12 |
| Average Contraction : |
0.75 |
| Total Fragmentation : |
3725 |
| Partition Asymmetry : |
0.64 |
| Average Rall's Ratio : |
1.72 |
| Average Bifurcation Angle Local : |
84.34° |
| Average Bifurcation Angle Remote : |
75.01° |
| Fractal Dimension : |
1.09 |
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