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| Details about selected cell |
| NeuroMorpho.Org ID : | NMO_36942 |
| Cell Name : | TKB061006C1-CH0-CL-H-ZK-60X-0 |
| Archive Name : | Markram |
| Species Name : | rat |
| Strain : | Han Wistar |
| Structural Domains : | Dendrites, Soma, Axon |
| Physical Integrity : | Dendrites Complete, Axon Moderate |
| Morphological Attributes : | No Diameter, 3D, Angles |
| Min Age : | 14.0 days
|
| Max Age : | 14.0 days
|
| Gender : |
Male
|
| Min Weight : | Not reported
|
| Max Weight : | Not reported
|
| Development : | young |
| Primary Brain Region : | neocortex |
| Secondary Brain Region : | somatosensory |
| Tertiary Brain Region : | layer 6 |
| Primary Cell Class : | interneuron |
| Secondary Cell Class : | pyramidal |
| Tertiary Cell Class : | bipolar |
| Original Format : | Neurolucida.asc |
| Experiment Protocol : | in vitro |
| Experimental Condition : | Control |
| Staining Method : | biocytin |
| Slicing Direction : | parasagittal |
| Slice Thickness : | 200
μm |
| Tissue Shrinkage : |
Reported 10% in xy, 25% in z
Corrected (no values given)
|
| Objective Type : | water or oil |
| Magnification : | 60x |
| Reconstruction Method : | Neurolucida |
| Date of Deposition : | 2015-03-06 |
| Date of Upload : | 2016-03-04 |
| Persistence Vector : | TKB061006C1-CH0-CL-H-ZK-60X-0.pvec |
| Note : | Tissue shrinkage - corrected only in z-axis. Two separate dendritic trees are labeled as 'apical' in the original file. |
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| Reference Articles |
| Primary Article Reference : | Brief bursts self-inhibit and correlate the pyramidal network. |
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| Secondary Article Reference : | Frequency-dependent disynaptic inhibition in the pyramidal network: a ubiquitous pathway in the developing rat neocortex. |
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| Measurements |
| Soma Surface : |
434.5 μm2 |
| Number of Stems : |
6 |
| Number of Bifurcations : |
35 |
| Number of Branches : |
76 |
| Overall Width : |
375.97 μm |
| Overall Height : |
603.63 μm |
| Overall Depth : |
144.74 μm |
| Average Diameter : |
0.45 μm |
| Total Length : |
6327.7 μm |
| Total Surface : |
8815.11 μm2 |
| Total Volume : |
1437.26 μm3 |
| Max Euclidean Distance : |
442.04 μm |
| Max Path Distance : |
733.42 μm |
| Max Branch Order : |
12 |
| Average Contraction : |
0.87 |
| Total Fragmentation : |
2784 |
| Partition Asymmetry : |
0.57 |
| Average Rall's Ratio : |
1.46 |
| Average Bifurcation Angle Local : |
90.39° |
| Average Bifurcation Angle Remote : |
78.24° |
| Fractal Dimension : |
1.04 |
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