8.6.82 - Released: 2025-05-21 - Content: 275062 cells
Morphology File (Standardized)
Morphology File (Original)
Log File (Standardized)
Log File (Original)



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NeuroMorpho.Org ID :  NMO_110044
Cell Name :  T3-Day-1-no-filos_1
Archive Name :  Cohen-Cory
Species Name :  Xenopus laevis
Strain :  Wildtype
Structural Domains :  Dendrites, Soma, No Axon
Physical Integrity :  Dendrites Complete
Morphological Attributes :  Diameter, 3D, Angles
Min Age :  6.0 days
Max Age :  6.0 days
Gender :  Not reported
Min Weight :  Not reported
Max Weight :  Not reported
Development :  tadpole
Primary Brain Region :  mesencephalon
Secondary Brain Region :  tectum
Tertiary Brain Region :  optic
Primary Cell Class :  principal cell
Secondary Cell Class :  Not reported
Tertiary Cell Class :  Not reported
Original Format :  Neuromantic.swc
Experiment Protocol :  in vivo
Experimental Condition :  DSCAM downregulation
Staining Method :  Alexa Fluor 488 - Dextran
Slicing Direction :  horizontal
Slice Thickness :  1  μm
Tissue Shrinkage :  Not reported
Objective Type :  water
Magnification :  63x
Reconstruction Method :  Neuromantic
Date of Deposition :  2019-04-11
Date of Upload :  2019-08-19
Persistence Vector :  T3-Day-1-no-filos_1.pvec
Note :  Embryonic stage 45. Imaging started 5 days post fertilization. Co-labeled by single-cell electroporation with Lissamine-tagged morpholino

Reference Article
Related Article Reference :  DSCAM differentially modulates pre- and postsynaptic structural and functional central connectivity during visual system wiring.

Measurements
Soma Surface :  258.01 μm2
Number of Stems :  2
Number of Bifurcations :  7
Number of Branches :  16
Overall Width :  28.09 μm
Overall Height :  80.87 μm
Overall Depth :  14.74 μm
Average Diameter :  0.81 μm
Total Length :  214.93 μm
Total Surface :  616.89 μm2
Total Volume :  198.22 μm3
Max Euclidean Distance :  85.88 μm
Max Path Distance :  98.41 μm
Max Branch Order :  5
Average Contraction :  0.9
Total Fragmentation :  230
Partition Asymmetry :  0.45
Average Rall's Ratio :  1.64
Average Bifurcation Angle Local :  59.78°
Average Bifurcation Angle Remote :  62.32°
Fractal Dimension :  1.05

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