8.6.82 - Released: 2025-05-21 - Content: 275062 cells
Morphology File (Standardized)
Morphology File (Original)
Log File (Standardized)
Log File (Original)



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NeuroMorpho.Org ID :  NMO_181297
Cell Name :  SRFTD332_22Cell_annotatio1
Archive Name :  Richards
Species Name :  mouse
Strain :  Rem2flx/flx; Ai9TdTomatoflex/flex
Structural Domains :  Dendrites, Soma, No Axon
Physical Integrity :  Dendrites Complete
Morphological Attributes :  No Diameter, 3D, Angles
Min Age :  31.0 days
Max Age :  31.0 days
Gender :  Male/Female
Min Weight :  Not reported
Max Weight :  Not reported
Development :  adult
Primary Brain Region :  neocortex
Secondary Brain Region :  occipital
Tertiary Brain Region :  primary visual, layer 2-3
Primary Cell Class :  principal cell
Secondary Cell Class :  pyramidal
Tertiary Cell Class :  Not reported
Original Format :  Knossos.xml
Experiment Protocol :  in vivo
Experimental Condition :  Rem2 conditional knockout
Staining Method :  td Tomato fluorescent protein
Slicing Direction :  coronal
Slice Thickness :  150  μm
Tissue Shrinkage :  Not reported
Objective Type :  dry
Magnification :  20x
Reconstruction Method :  Knossos
Date of Deposition :  2021-10-21
Date of Upload :  2022-03-14
Persistence Vector :  SRFTD332_22Cell_annotatio1.pvec
Note :  Mice were injected with AAV.GFP-Cre at P20 to activate reporter expression and manipulate Rem2 expression. This reconstruction was obtained 11 days post-injection. Only basal dendrites were reconstructed.

Reference Article
Related Article Reference :  Experience-Dependent Development of Dendritic Arbors in Mouse Visual Cortex.

Measurements
Soma Surface :  479.5 μm2
Number of Stems :  6
Number of Bifurcations :  29
Number of Branches :  64
Overall Width :  162.25 μm
Overall Height :  182.27 μm
Overall Depth :  50.23 μm
Average Diameter :  2 μm
Total Length :  2431.31 μm
Total Surface :  15276.4 μm2
Total Volume :  7638.2 μm3
Max Euclidean Distance :  149.41 μm
Max Path Distance :  164.16 μm
Max Branch Order :  6
Average Contraction :  0.92
Total Fragmentation :  648
Partition Asymmetry :  0.47
Average Rall's Ratio :  2
Average Bifurcation Angle Local :  63.37°
Average Bifurcation Angle Remote :  60.7°
Fractal Dimension :  1.03

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