8.6.82 - Released: 2025-05-21 - Content: 275062 cells
Morphology File (Standardized)
Morphology File (Original)
Log File (Standardized)
Log File (Original)



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NeuroMorpho.Org ID :  NMO_181774
Cell Name :  SRFTD136_25Cell_annotatio1
Archive Name :  Richards
Species Name :  mouse
Strain :  Rem2+/+;Ai9TdTomatoflex/flex
Structural Domains :  Dendrites, Soma, No Axon
Physical Integrity :  Dendrites Complete
Morphological Attributes :  No Diameter, 3D, Angles
Min Age :  29.0 days
Max Age :  29.0 days
Gender :  Female
Min Weight :  7.9 grams
Max Weight :  7.9 grams
Development :  young adult
Primary Brain Region :  neocortex
Secondary Brain Region :  occipital
Tertiary Brain Region :  primary visual, layer 2-3
Primary Cell Class :  principal cell
Secondary Cell Class :  pyramidal
Tertiary Cell Class :  Not reported
Original Format :  Knossos.xml
Experiment Protocol :  in vivo
Experimental Condition :  Control
Staining Method :  td Tomato fluorescent protein
Slicing Direction :  coronal
Slice Thickness :  150  μm
Tissue Shrinkage :  Not reported
Objective Type :  dry
Magnification :  20x
Reconstruction Method :  Knossos
Date of Deposition :  2021-10-21
Date of Upload :  2022-03-14
Persistence Vector :  SRFTD136_25Cell_annotatio1.pvec
Note :  Mice were injected with AAV.GFP-Cre at P20 to activate reporter expression. This reconstruction was obtained 9 days post-injection. Only basal dendrites were reconstructed.

Reference Article
Related Article Reference :  Experience-Dependent Development of Dendritic Arbors in Mouse Visual Cortex.

Measurements
Soma Surface :  367.73 μm2
Number of Stems :  4
Number of Bifurcations :  12
Number of Branches :  28
Overall Width :  116.48 μm
Overall Height :  149.13 μm
Overall Depth :  35.24 μm
Average Diameter :  2 μm
Total Length :  961.43 μm
Total Surface :  6040.86 μm2
Total Volume :  3020.43 μm3
Max Euclidean Distance :  124.79 μm
Max Path Distance :  138.52 μm
Max Branch Order :  5
Average Contraction :  0.95
Total Fragmentation :  242
Partition Asymmetry :  0.46
Average Rall's Ratio :  2
Average Bifurcation Angle Local :  71.89°
Average Bifurcation Angle Remote :  62.79°
Fractal Dimension :  1.02

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