8.6.82 - Released: 2025-05-21 - Content: 275062 cells
Morphology File (Standardized)
Morphology File (Original)
Log File (Standardized)
Log File (Original)



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NeuroMorpho.Org ID :  NMO_181654
Cell Name :  SRFTD136_11Cell_annotatio1
Archive Name :  Richards
Species Name :  mouse
Strain :  Rem2+/+;Ai9TdTomatoflex/flex
Structural Domains :  Dendrites, Soma, No Axon
Physical Integrity :  Dendrites Complete
Morphological Attributes :  No Diameter, 3D, Angles
Min Age :  29.0 days
Max Age :  29.0 days
Gender :  Female
Min Weight :  7.9 grams
Max Weight :  7.9 grams
Development :  young adult
Primary Brain Region :  neocortex
Secondary Brain Region :  occipital
Tertiary Brain Region :  primary visual, layer 2-3
Primary Cell Class :  principal cell
Secondary Cell Class :  pyramidal
Tertiary Cell Class :  Not reported
Original Format :  Knossos.xml
Experiment Protocol :  in vivo
Experimental Condition :  Control
Staining Method :  td Tomato fluorescent protein
Slicing Direction :  coronal
Slice Thickness :  150  μm
Tissue Shrinkage :  Not reported
Objective Type :  dry
Magnification :  20x
Reconstruction Method :  Knossos
Date of Deposition :  2021-10-21
Date of Upload :  2022-03-14
Persistence Vector :  SRFTD136_11Cell_annotatio1.pvec
Note :  Mice were injected with AAV.GFP-Cre at P20 to activate reporter expression. This reconstruction was obtained 9 days post-injection. Only basal dendrites were reconstructed.

Reference Article
Related Article Reference :  Experience-Dependent Development of Dendritic Arbors in Mouse Visual Cortex.

Measurements
Soma Surface :  264.25 μm2
Number of Stems :  5
Number of Bifurcations :  30
Number of Branches :  65
Overall Width :  160.95 μm
Overall Height :  291.35 μm
Overall Depth :  65.82 μm
Average Diameter :  2 μm
Total Length :  3009.06 μm
Total Surface :  18906.5 μm2
Total Volume :  9453.25 μm3
Max Euclidean Distance :  222.1 μm
Max Path Distance :  249.65 μm
Max Branch Order :  7
Average Contraction :  0.91
Total Fragmentation :  722
Partition Asymmetry :  0.46
Average Rall's Ratio :  2
Average Bifurcation Angle Local :  58.97°
Average Bifurcation Angle Remote :  57.51°
Fractal Dimension :  1.03

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