8.6.82 - Released: 2025-05-21 - Content: 275062 cells
Morphology File (Standardized)
Morphology File (Original)
Log File (Standardized)
Log File (Original)



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NeuroMorpho.Org ID :  NMO_181419
Cell Name :  SRFTD131_21Cell__annotaaaa
Archive Name :  Richards
Species Name :  mouse
Strain :  Rem2flx/flx; Ai9TdTomatoflex/flex
Structural Domains :  Dendrites, Soma, No Axon
Physical Integrity :  Dendrites Complete
Morphological Attributes :  No Diameter, 3D, Angles
Min Age :  25.0 days
Max Age :  25.0 days
Gender :  Male
Min Weight :  8.9 grams
Max Weight :  10.5 grams
Development :  young adult
Primary Brain Region :  neocortex
Secondary Brain Region :  occipital
Tertiary Brain Region :  primary visual, layer 2-3
Primary Cell Class :  principal cell
Secondary Cell Class :  pyramidal
Tertiary Cell Class :  Not reported
Original Format :  Knossos.xml
Experiment Protocol :  in vivo
Experimental Condition :  Rem2 conditional knockout
Staining Method :  td Tomato fluorescent protein
Slicing Direction :  coronal
Slice Thickness :  150  μm
Tissue Shrinkage :  Not reported
Objective Type :  dry
Magnification :  20x
Reconstruction Method :  Knossos
Date of Deposition :  2021-10-21
Date of Upload :  2022-03-14
Persistence Vector :  SRFTD131_21Cell__annotaaaa.pvec
Note :  Mice were injected with AAV.GFP-Cre at P20 to activate reporter expression and manipulate Rem2 expression. This reconstruction was obtained 5 days post-injection. Only basal dendrites were reconstructed.

Reference Article
Related Article Reference :  Experience-Dependent Development of Dendritic Arbors in Mouse Visual Cortex.

Measurements
Soma Surface :  570.77 μm2
Number of Stems :  6
Number of Bifurcations :  19
Number of Branches :  44
Overall Width :  103.77 μm
Overall Height :  188.79 μm
Overall Depth :  51.99 μm
Average Diameter :  2 μm
Total Length :  1686.69 μm
Total Surface :  10597.8 μm2
Total Volume :  5298.89 μm3
Max Euclidean Distance :  123.46 μm
Max Path Distance :  134.15 μm
Max Branch Order :  4
Average Contraction :  0.92
Total Fragmentation :  386
Partition Asymmetry :  0.53
Average Rall's Ratio :  2
Average Bifurcation Angle Local :  59.34°
Average Bifurcation Angle Remote :  48.47°
Fractal Dimension :  1.02

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