8.6.82 - Released: 2025-05-21 - Content: 275062 cells
Morphology File (Standardized)
Morphology File (Original)
Log File (Standardized)
Log File (Original)



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NeuroMorpho.Org ID :  NMO_181074
Cell Name :  SRFTD044_1Cell1_annotation
Archive Name :  Richards
Species Name :  mouse
Strain :  Rem2+/+;Ai9TdTomatoflex/flex
Structural Domains :  Dendrites, Soma, No Axon
Physical Integrity :  Dendrites Complete
Morphological Attributes :  No Diameter, 3D, Angles
Min Age :  25.0 days
Max Age :  25.0 days
Gender :  Male
Min Weight :  7.1 grams
Max Weight :  9.9 grams
Development :  young adult
Primary Brain Region :  neocortex
Secondary Brain Region :  occipital
Tertiary Brain Region :  primary visual, layer 2-3
Primary Cell Class :  principal cell
Secondary Cell Class :  pyramidal
Tertiary Cell Class :  Not reported
Original Format :  Knossos.xml
Experiment Protocol :  in vivo
Experimental Condition :  Control
Staining Method :  td Tomato fluorescent protein
Slicing Direction :  coronal
Slice Thickness :  150  μm
Tissue Shrinkage :  Not reported
Objective Type :  dry
Magnification :  20x
Reconstruction Method :  Knossos
Date of Deposition :  2021-10-21
Date of Upload :  2022-03-14
Persistence Vector :  SRFTD044_1Cell1_annotation.pvec
Note :  Mice were injected with AAV.GFP-Cre at P20 to activate reporter expression. This reconstruction was obtained 5 days post-injection. Only basal dendrites were reconstructed.

Reference Article
Related Article Reference :  Experience-Dependent Development of Dendritic Arbors in Mouse Visual Cortex.

Measurements
Soma Surface :  789.8 μm2
Number of Stems :  5
Number of Bifurcations :  26
Number of Branches :  57
Overall Width :  124.53 μm
Overall Height :  189.07 μm
Overall Depth :  37.15 μm
Average Diameter :  2 μm
Total Length :  2105.79 μm
Total Surface :  13231.1 μm2
Total Volume :  6615.54 μm3
Max Euclidean Distance :  116.86 μm
Max Path Distance :  134.47 μm
Max Branch Order :  5
Average Contraction :  0.9
Total Fragmentation :  615
Partition Asymmetry :  0.46
Average Rall's Ratio :  2
Average Bifurcation Angle Local :  71.84°
Average Bifurcation Angle Remote :  61.29°
Fractal Dimension :  1.03

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