8.6.82 - Released: 2025-05-21 - Content: 275062 cells
Morphology File (Standardized)
Morphology File (Original)
Log File (Standardized)
Log File (Original)



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NeuroMorpho.Org ID :  NMO_181085
Cell Name :  SRFTD025_3Cell2_annotation
Archive Name :  Richards
Species Name :  mouse
Strain :  Rem2+/+;Ai9TdTomatoflex/flex
Structural Domains :  Dendrites, Soma, No Axon
Physical Integrity :  Dendrites Complete
Morphological Attributes :  No Diameter, 3D, Angles
Min Age :  25.0 days
Max Age :  25.0 days
Gender :  Male
Min Weight :  7.1 grams
Max Weight :  9.9 grams
Development :  young adult
Primary Brain Region :  neocortex
Secondary Brain Region :  occipital
Tertiary Brain Region :  primary visual, layer 2-3
Primary Cell Class :  principal cell
Secondary Cell Class :  pyramidal
Tertiary Cell Class :  Not reported
Original Format :  Knossos.xml
Experiment Protocol :  in vivo
Experimental Condition :  Control
Staining Method :  td Tomato fluorescent protein
Slicing Direction :  coronal
Slice Thickness :  150  μm
Tissue Shrinkage :  Not reported
Objective Type :  dry
Magnification :  20x
Reconstruction Method :  Knossos
Date of Deposition :  2021-10-21
Date of Upload :  2022-03-14
Persistence Vector :  SRFTD025_3Cell2_annotation.pvec
Note :  Mice were injected with AAV.GFP-Cre at P20 to activate reporter expression. This reconstruction was obtained 5 days post-injection. Only basal dendrites were reconstructed.

Reference Article
Related Article Reference :  Experience-Dependent Development of Dendritic Arbors in Mouse Visual Cortex.

Measurements
Soma Surface :  284.29 μm2
Number of Stems :  5
Number of Bifurcations :  19
Number of Branches :  43
Overall Width :  165.47 μm
Overall Height :  214.29 μm
Overall Depth :  43.56 μm
Average Diameter :  2 μm
Total Length :  1928.77 μm
Total Surface :  12118.8 μm2
Total Volume :  6059.4 μm3
Max Euclidean Distance :  136.88 μm
Max Path Distance :  172.03 μm
Max Branch Order :  4
Average Contraction :  0.91
Total Fragmentation :  410
Partition Asymmetry :  0.36
Average Rall's Ratio :  2
Average Bifurcation Angle Local :  59.61°
Average Bifurcation Angle Remote :  56.27°
Fractal Dimension :  1.03

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