8.6.82 - Released: 2025-05-21 - Content: 275062 cells
Morphology File (Standardized)
Morphology File (Original)
Log File (Standardized)
Log File (Original)



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NeuroMorpho.Org ID :  NMO_181380
Cell Name :  RI1475_Mid1_SRFinal_annot
Archive Name :  Richards
Species Name :  mouse
Strain :  Rem2-/-
Structural Domains :  Dendrites, Soma, No Axon
Physical Integrity :  Dendrites Complete
Morphological Attributes :  No Diameter, 3D, Angles
Min Age :  30.0 days
Max Age :  30.0 days
Gender :  Male
Min Weight :  Not reported
Max Weight :  Not reported
Development :  young adult
Primary Brain Region :  neocortex
Secondary Brain Region :  occipital
Tertiary Brain Region :  primary visual, medial, layer 2-3
Primary Cell Class :  principal cell
Secondary Cell Class :  pyramidal
Tertiary Cell Class :  Not reported
Original Format :  Knossos.xml
Experiment Protocol :  in vitro
Experimental Condition :  Rem2 knockout + dark rearing
Staining Method :  Golgi-Cox
Slicing Direction :  coronal
Slice Thickness :  150  μm
Tissue Shrinkage :  Not reported
Objective Type :  dry
Magnification :  20x
Reconstruction Method :  Knossos
Date of Deposition :  2021-10-21
Date of Upload :  2022-03-14
Persistence Vector :  RI1475_Mid1_SRFinal_annot.pvec
Note :  This reconstruction was obtained from a dark-reared (DR) littermate mouse. DR littermate mice were placed in a light-tight box beginning at P9 until the termination of the experiment. Only basal dendrites were reconstructed.

Reference Article
Related Article Reference :  Experience-Dependent Development of Dendritic Arbors in Mouse Visual Cortex.

Measurements
Soma Surface :  621.42 μm2
Number of Stems :  5
Number of Bifurcations :  8
Number of Branches :  21
Overall Width :  163.93 μm
Overall Height :  269.96 μm
Overall Depth :  52.27 μm
Average Diameter :  2 μm
Total Length :  1500.1 μm
Total Surface :  9425.38 μm2
Total Volume :  4712.69 μm3
Max Euclidean Distance :  222.63 μm
Max Path Distance :  253.57 μm
Max Branch Order :  2
Average Contraction :  0.89
Total Fragmentation :  234
Partition Asymmetry :  0.38
Average Rall's Ratio :  2
Average Bifurcation Angle Local :  87.93°
Average Bifurcation Angle Remote :  66.84°
Fractal Dimension :  1.03

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