8.6.82 - Released: 2025-05-21 - Content: 275062 cells
Morphology File (Standardized)
Morphology File (Original)
Log File (Standardized)
Log File (Original)



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NeuroMorpho.Org ID :  NMO_181155
Cell Name :  RI1117_Mid4_SRFinal_annot
Archive Name :  Richards
Species Name :  mouse
Strain :  Rem2-/-
Structural Domains :  Dendrites, Soma, No Axon
Physical Integrity :  Dendrites Complete
Morphological Attributes :  No Diameter, 3D, Angles
Min Age :  21.0 days
Max Age :  21.0 days
Gender :  Male
Min Weight :  11.8 grams
Max Weight :  15.2 grams
Development :  young adult
Primary Brain Region :  neocortex
Secondary Brain Region :  occipital
Tertiary Brain Region :  primary visual, medial, layer 2-3
Primary Cell Class :  principal cell
Secondary Cell Class :  pyramidal
Tertiary Cell Class :  Not reported
Original Format :  Knossos.xml
Experiment Protocol :  in vitro
Experimental Condition :  Rem2 knockout + dark rearing
Staining Method :  Golgi-Cox
Slicing Direction :  coronal
Slice Thickness :  150  μm
Tissue Shrinkage :  Not reported
Objective Type :  dry
Magnification :  20x
Reconstruction Method :  Knossos
Date of Deposition :  2021-10-21
Date of Upload :  2022-03-14
Persistence Vector :  RI1117_Mid4_SRFinal_annot.pvec
Note :  This reconstruction was obtained from a dark-reared (DR) littermate mouse. DR littermate mice were placed in a light-tight box beginning at P9 until the termination of the experiment. Only basal dendrites were reconstructed.

Reference Article
Related Article Reference :  Experience-Dependent Development of Dendritic Arbors in Mouse Visual Cortex.

Measurements
Soma Surface :  254.9 μm2
Number of Stems :  5
Number of Bifurcations :  18
Number of Branches :  41
Overall Width :  277.85 μm
Overall Height :  412.1 μm
Overall Depth :  24.44 μm
Average Diameter :  2 μm
Total Length :  3441.26 μm
Total Surface :  21622 μm2
Total Volume :  10811 μm3
Max Euclidean Distance :  265.66 μm
Max Path Distance :  302.23 μm
Max Branch Order :  5
Average Contraction :  0.91
Total Fragmentation :  463
Partition Asymmetry :  0.63
Average Rall's Ratio :  2
Average Bifurcation Angle Local :  57.82°
Average Bifurcation Angle Remote :  42.82°
Fractal Dimension :  1.02

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