8.6.82 - Released: 2025-05-21 - Content: 275062 cells
Morphology File (Standardized)
Morphology File (Original)
Log File (Standardized)
Log File (Original)



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NeuroMorpho.Org ID :  NMO_181634
Cell Name :  RI0405_Mid1_Final_annotat
Archive Name :  Richards
Species Name :  mouse
Strain :  Rem2-/-
Structural Domains :  Dendrites, Soma, No Axon
Physical Integrity :  Dendrites Complete
Morphological Attributes :  No Diameter, 3D, Angles
Min Age :  30.0 days
Max Age :  30.0 days
Gender :  Female
Min Weight :  Not reported
Max Weight :  Not reported
Development :  young adult
Primary Brain Region :  neocortex
Secondary Brain Region :  occipital
Tertiary Brain Region :  primary visual, medial, layer 2-3
Primary Cell Class :  principal cell
Secondary Cell Class :  pyramidal
Tertiary Cell Class :  Not reported
Original Format :  Knossos.xml
Experiment Protocol :  in vitro
Experimental Condition :  Rem2 knockout + dark rearing
Staining Method :  Golgi-Cox
Slicing Direction :  coronal
Slice Thickness :  150  μm
Tissue Shrinkage :  Not reported
Objective Type :  dry
Magnification :  20x
Reconstruction Method :  Knossos
Date of Deposition :  2021-10-21
Date of Upload :  2022-03-14
Persistence Vector :  RI0405_Mid1_Final_annotat.pvec
Note :  This reconstruction was obtained from a dark-reared (DR) littermate mouse. DR littermate mice were placed in a light-tight box beginning at P9 until the termination of the experiment. Only basal dendrites were reconstructed.

Reference Article
Related Article Reference :  Experience-Dependent Development of Dendritic Arbors in Mouse Visual Cortex.

Measurements
Soma Surface :  497.34 μm2
Number of Stems :  8
Number of Bifurcations :  3
Number of Branches :  14
Overall Width :  101.39 μm
Overall Height :  177.57 μm
Overall Depth :  30.45 μm
Average Diameter :  2 μm
Total Length :  956.07 μm
Total Surface :  6007.13 μm2
Total Volume :  3003.57 μm3
Max Euclidean Distance :  115.69 μm
Max Path Distance :  147.49 μm
Max Branch Order :  1
Average Contraction :  0.87
Total Fragmentation :  215
Partition Asymmetry :  0
Average Rall's Ratio :  2
Average Bifurcation Angle Local :  65.01°
Average Bifurcation Angle Remote :  82.81°
Fractal Dimension :  1.04

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