8.6.82 - Released: 2025-05-21 - Content: 275062 cells
Morphology File (Standardized)
Morphology File (Original)
Log File (Standardized)
Log File (Original)



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NeuroMorpho.Org ID :  NMO_181050
Cell Name :  RI0139_Post4_SRFinal_anno
Archive Name :  Richards
Species Name :  mouse
Strain :  Rem2-/-
Structural Domains :  Dendrites, Soma, No Axon
Physical Integrity :  Dendrites Complete
Morphological Attributes :  No Diameter, 3D, Angles
Min Age :  16.0 days
Max Age :  16.0 days
Gender :  Male
Min Weight :  5.6 grams
Max Weight :  11.9 grams
Development :  young adult
Primary Brain Region :  neocortex
Secondary Brain Region :  occipital
Tertiary Brain Region :  primary visual, layer 2-3, posterior
Primary Cell Class :  principal cell
Secondary Cell Class :  pyramidal
Tertiary Cell Class :  Not reported
Original Format :  Knossos.xml
Experiment Protocol :  in vitro
Experimental Condition :  Rem2 knockout + dark rearing
Staining Method :  Golgi-Cox
Slicing Direction :  coronal
Slice Thickness :  150  μm
Tissue Shrinkage :  Not reported
Objective Type :  dry
Magnification :  20x
Reconstruction Method :  Knossos
Date of Deposition :  2021-10-21
Date of Upload :  2022-03-14
Persistence Vector :  RI0139_Post4_SRFinal_anno.pvec
Note :  This reconstruction was obtained from a dark-reared (DR) littermate mouse. DR littermate mice were placed in a light-tight box beginning at P9 until the termination of the experiment. Only basal dendrites were reconstructed.

Reference Article
Related Article Reference :  Experience-Dependent Development of Dendritic Arbors in Mouse Visual Cortex.

Measurements
Soma Surface :  491.18 μm2
Number of Stems :  10
Number of Bifurcations :  18
Number of Branches :  46
Overall Width :  175.36 μm
Overall Height :  192.07 μm
Overall Depth :  37.57 μm
Average Diameter :  2 μm
Total Length :  1951.97 μm
Total Surface :  12264.6 μm2
Total Volume :  6132.29 μm3
Max Euclidean Distance :  144.82 μm
Max Path Distance :  230.72 μm
Max Branch Order :  4
Average Contraction :  0.89
Total Fragmentation :  406
Partition Asymmetry :  0.35
Average Rall's Ratio :  2
Average Bifurcation Angle Local :  78.4°
Average Bifurcation Angle Remote :  73.48°
Fractal Dimension :  1.04

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