8.6.82 - Released: 2025-05-21 - Content: 275062 cells
Morphology File (Standardized)
Morphology File (Original)
Log File (Standardized)
Log File (Original)



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NeuroMorpho.Org ID :  NMO_181705
Cell Name :  RI0078_Mid4_SRFinal_annot
Archive Name :  Richards
Species Name :  mouse
Strain :  Rem2-/-
Structural Domains :  Dendrites, Soma, No Axon
Physical Integrity :  Dendrites Complete
Morphological Attributes :  No Diameter, 3D, Angles
Min Age :  12.0 days
Max Age :  12.0 days
Gender :  Male
Min Weight :  5.9 grams
Max Weight :  5.9 grams
Development :  young
Primary Brain Region :  neocortex
Secondary Brain Region :  occipital
Tertiary Brain Region :  primary visual, medial, layer 2
Primary Cell Class :  principal cell
Secondary Cell Class :  pyramidal
Tertiary Cell Class :  Not reported
Original Format :  Knossos.xml
Experiment Protocol :  in vitro
Experimental Condition :  Rem2 knockout
Staining Method :  Golgi-Cox
Slicing Direction :  coronal
Slice Thickness :  150  μm
Tissue Shrinkage :  Not reported
Objective Type :  dry
Magnification :  20x
Reconstruction Method :  Knossos
Date of Deposition :  2021-10-21
Date of Upload :  2022-03-14
Persistence Vector :  RI0078_Mid4_SRFinal_annot.pvec
Note :  This reconstruction was obtained from a typically-reared (TR) littermate mouse. TR littermate mice were housed in a 12 h light/12 h dark cycle from birth until the specified age. Only basal dendrites were reconstructed.

Reference Article
Related Article Reference :  Experience-Dependent Development of Dendritic Arbors in Mouse Visual Cortex.

Measurements
Soma Surface :  741.22 μm2
Number of Stems :  4
Number of Bifurcations :  12
Number of Branches :  28
Overall Width :  171.72 μm
Overall Height :  164.87 μm
Overall Depth :  29.98 μm
Average Diameter :  2 μm
Total Length :  1457.14 μm
Total Surface :  9155.49 μm2
Total Volume :  4577.74 μm3
Max Euclidean Distance :  161.58 μm
Max Path Distance :  198.88 μm
Max Branch Order :  4
Average Contraction :  0.92
Total Fragmentation :  192
Partition Asymmetry :  0.49
Average Rall's Ratio :  2
Average Bifurcation Angle Local :  64.14°
Average Bifurcation Angle Remote :  56.61°
Fractal Dimension :  1.02

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