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| Details about selected cell |
| NeuroMorpho.Org ID : | NMO_138829 |
| Cell Name : | MF85_A2_10x_cell4_trace |
| Archive Name : | Jubao_Forrest |
| Species Name : | human |
| Strain : | Not applicable |
| Structural Domains : | Dendrites, Soma, No Axon |
| Physical Integrity : | Dendrites Complete |
| Morphological Attributes : | Diameter, 2D, Angles |
| Min Age : | 27.0 years
|
| Max Age : | 27.0 years
|
| Gender : |
Female
|
| Min Weight : | Not reported
|
| Max Weight : | Not reported
|
| Development : | adult |
| Primary Brain Region : | Central nervous system |
| Secondary Brain Region : | Not reported |
| Tertiary Brain Region : | Not reported |
| Primary Cell Class : | principal cell |
| Secondary Cell Class : | induced pluripotent stem cell-(iPSC)-derived |
| Tertiary Cell Class : | Excitatory, glutamatergic |
| Original Format : | Neuronstudio.swc |
| Experiment Protocol : | culture |
| Experimental Condition : | open chromatin peak deletion |
| Staining Method : | green fluorescent protein, immunostaining |
| Slicing Direction : | Not applicable |
| Slice Thickness : | Not applicable
|
| Tissue Shrinkage : |
Not reported
|
| Objective Type : | oil |
| Magnification : | 60x |
| Reconstruction Method : | NeuronStudio |
| Date of Deposition : | 2020-07-23 |
| Date of Upload : | 2020-08-18 |
| Persistence Vector : | MF85_A2_10x_cell4_trace.pvec |
| Note : | The heterozygous deletion of the open chromatin sequence flanking rs1198588 (rs1198588-OCpeak_del) showed an expression change that is expected for heterozygous rs1198588 (T/A). |
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| Reference Article |
| Related Article Reference : | Open Chromatin Profiling in hiPSC-Derived Neurons Prioritizes Functional Noncoding Psychiatric Risk Variants and Highlights Neurodevelopmental Loci. |
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| Measurements |
| Soma Surface : |
20.23 μm2 |
| Number of Stems : |
4 |
| Number of Bifurcations : |
7 |
| Number of Branches : |
18 |
| Overall Width : |
35.25 μm |
| Overall Height : |
72.27 μm |
| Overall Depth : |
0 μm |
| Average Diameter : |
0.74 μm |
| Total Length : |
179.26 μm |
| Total Surface : |
439.8 μm2 |
| Total Volume : |
94.48 μm3 |
| Max Euclidean Distance : |
47.73 μm |
| Max Path Distance : |
72.23 μm |
| Max Branch Order : |
5 |
| Average Contraction : |
0.96 |
| Total Fragmentation : |
323 |
| Partition Asymmetry : |
0.71 |
| Average Rall's Ratio : |
1.36 |
| Average Bifurcation Angle Local : |
112.85° |
| Average Bifurcation Angle Remote : |
95.35° |
| Fractal Dimension : |
1.02 |
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