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| Details about selected cell |
| NeuroMorpho.Org ID : | NMO_138654 |
| Cell Name : | MF85_A2_10x_cell1_trace |
| Archive Name : | Jubao_Forrest |
| Species Name : | human |
| Strain : | Not applicable |
| Structural Domains : | Dendrites, Soma, No Axon |
| Physical Integrity : | Dendrites Complete |
| Morphological Attributes : | No Diameter, 2D, Angles |
| Min Age : | 27.0 years
|
| Max Age : | 27.0 years
|
| Gender : |
Female
|
| Min Weight : | Not reported
|
| Max Weight : | Not reported
|
| Development : | adult |
| Primary Brain Region : | Central nervous system |
| Secondary Brain Region : | Not reported |
| Tertiary Brain Region : | Not reported |
| Primary Cell Class : | principal cell |
| Secondary Cell Class : | induced pluripotent stem cell-(iPSC)-derived |
| Tertiary Cell Class : | Excitatory, glutamatergic |
| Original Format : | Neuronstudio.swc |
| Experiment Protocol : | culture |
| Experimental Condition : | open chromatin peak deletion |
| Staining Method : | green fluorescent protein, immunostaining |
| Slicing Direction : | Not applicable |
| Slice Thickness : | Not applicable
|
| Tissue Shrinkage : |
Not reported
|
| Objective Type : | oil |
| Magnification : | 60x |
| Reconstruction Method : | NeuronStudio |
| Date of Deposition : | 2020-07-23 |
| Date of Upload : | 2020-08-18 |
| Persistence Vector : | MF85_A2_10x_cell1_trace.pvec |
| Note : | The heterozygous deletion of the open chromatin sequence flanking rs1198588 (rs1198588-OCpeak_del) showed an expression change that is expected for heterozygous rs1198588 (T/A). |
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| Reference Article |
| Related Article Reference : | Open Chromatin Profiling in hiPSC-Derived Neurons Prioritizes Functional Noncoding Psychiatric Risk Variants and Highlights Neurodevelopmental Loci. |
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| Measurements |
| Soma Surface : |
18 μm2 |
| Number of Stems : |
2 |
| Number of Bifurcations : |
4 |
| Number of Branches : |
10 |
| Overall Width : |
22.27 μm |
| Overall Height : |
35.48 μm |
| Overall Depth : |
0 μm |
| Average Diameter : |
0.8 μm |
| Total Length : |
78.63 μm |
| Total Surface : |
211.4 μm2 |
| Total Volume : |
49.6 μm3 |
| Max Euclidean Distance : |
29.46 μm |
| Max Path Distance : |
34 μm |
| Max Branch Order : |
4 |
| Average Contraction : |
0.96 |
| Total Fragmentation : |
135 |
| Partition Asymmetry : |
0.75 |
| Average Rall's Ratio : |
0.99 |
| Average Bifurcation Angle Local : |
96.97° |
| Average Bifurcation Angle Remote : |
92.25° |
| Fractal Dimension : |
1.01 |
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0
