8.6.79 - Released: 2025-04-16 - Content: 273841 cells
Morphology File (Standardized)
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Log File (Original)



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NeuroMorpho.Org ID :  NMO_165554
Cell Name :  L2_18864_3618_x3979_y1722
Archive Name :  BICCN-MOp-miniatlas-anatomy
Species Name :  mouse
Strain :  Cux2-CreERT2;Ai166
Structural Domains :  Dendrites, Soma, Axon
Physical Integrity :  Dendrites & Axon Complete
Morphological Attributes :  Diameter, 3D, Angles
Min Age :  56.0 days
Max Age :  56.0 days
Gender :  Male/Female
Min Weight :  Not reported
Max Weight :  Not reported
Development :  adult
Primary Brain Region :  neocortex
Secondary Brain Region :  frontal
Tertiary Brain Region :  primary motor, layer 2-3
Primary Cell Class :  principal cell
Secondary Cell Class :  pyramidal
Tertiary Cell Class :  Intratelencephalic (IT)
Original Format :  Vaa3D.swc
Experiment Protocol :  in vivo
Experimental Condition :  Control
Staining Method :  enhanced green fluorescent protein
Slicing Direction :  whole mount
Slice Thickness :  Not applicable
Tissue Shrinkage :  Not reported
Objective Type :  dry
Magnification :  40x
Reconstruction Method :  Vaa3D
Date of Deposition :  2020-04-03
Date of Upload :  2021-10-06
Persistence Vector :  L2_18864_3618_x3979_y1722.pvec
Note :  This reconstruction was obtained from the SEU-ALLEN Joint Center, and it is registered to the Common Coordinate Framework (CCF).

Reference Article
Related Article Reference :  Cellular Anatomy of the Mouse Primary Motor Cortex

Measurements
Soma Surface :  138.14 μm2
Number of Stems :  9
Number of Bifurcations :  271
Number of Branches :  551
Overall Width :  4876.16 μm
Overall Height :  3369.1 μm
Overall Depth :  6460.73 μm
Average Diameter :  2.21 μm
Total Length :  88902.8 μm
Total Surface :  624572 μm2
Total Volume :  383787 μm3
Max Euclidean Distance :  5168.73 μm
Max Path Distance :  9711.35 μm
Max Branch Order :  27
Average Contraction :  0.91
Total Fragmentation :  11610
Partition Asymmetry :  0.52
Average Rall's Ratio :  2.27
Average Bifurcation Angle Local :  74.13°
Average Bifurcation Angle Remote :  67.8°
Fractal Dimension :  1.02

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