8.6.79 - Released: 2025-04-16 - Content: 273841 cells
Morphology File (Standardized)
Morphology File (Original)
Log File (Standardized)
Log File (Original)



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NeuroMorpho.Org ID :  NMO_165345
Cell Name :  L2_17781_3389_x3360_y3842
Archive Name :  BICCN-MOp-miniatlas-anatomy
Species Name :  mouse
Strain :  Gnb4-IRES2-CreERT2;Ai139-hyg
Structural Domains :  Dendrites, Soma, Axon
Physical Integrity :  Dendrites & Axon Complete
Morphological Attributes :  Diameter, 3D, Angles
Min Age :  56.0 days
Max Age :  56.0 days
Gender :  Male/Female
Min Weight :  Not reported
Max Weight :  Not reported
Development :  adult
Primary Brain Region :  neocortex
Secondary Brain Region :  frontal
Tertiary Brain Region :  primary motor, layer 6
Primary Cell Class :  principal cell
Secondary Cell Class :  pyramidal
Tertiary Cell Class :  Intratelencephalic (IT)
Original Format :  Vaa3D.swc
Experiment Protocol :  in vivo
Experimental Condition :  Control
Staining Method :  enhanced green fluorescent protein
Slicing Direction :  whole mount
Slice Thickness :  Not applicable
Tissue Shrinkage :  Not reported
Objective Type :  dry
Magnification :  40x
Reconstruction Method :  Vaa3D
Date of Deposition :  2020-04-03
Date of Upload :  2021-10-06
Persistence Vector :  L2_17781_3389_x3360_y3842.pvec
Note :  This reconstruction was obtained from the SEU-ALLEN Joint Center, and it is registered to the Common Coordinate Framework (CCF).

Reference Article
Related Article Reference :  Cellular Anatomy of the Mouse Primary Motor Cortex

Measurements
Soma Surface :  27.17 μm2
Number of Stems :  7
Number of Bifurcations :  146
Number of Branches :  299
Overall Width :  1879.55 μm
Overall Height :  5432.88 μm
Overall Depth :  2094.05 μm
Average Diameter :  2 μm
Total Length :  50294.2 μm
Total Surface :  315966 μm2
Total Volume :  157970 μm3
Max Euclidean Distance :  4291.53 μm
Max Path Distance :  6774.32 μm
Max Branch Order :  15
Average Contraction :  0.9
Total Fragmentation :  7759
Partition Asymmetry :  0.55
Average Rall's Ratio :  2
Average Bifurcation Angle Local :  81.92°
Average Bifurcation Angle Remote :  69.49°
Fractal Dimension :  1.02

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