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Morphology File (Standardized)
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Log File (Original)



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NeuroMorpho.Org ID :  NMO_165321
Cell Name :  L2_17543_3073_x3519_y3215
Archive Name :  BICCN-MOp-miniatlas-anatomy
Species Name :  mouse
Strain :  Tlx3-Cre_PL56;Ai82;Ai161
Structural Domains :  Dendrites, Soma, Axon
Physical Integrity :  Dendrites & Axon Complete
Morphological Attributes :  Diameter, 3D, Angles
Min Age :  56.0 days
Max Age :  56.0 days
Gender :  Male/Female
Min Weight :  Not reported
Max Weight :  Not reported
Development :  adult
Primary Brain Region :  neocortex
Secondary Brain Region :  frontal
Tertiary Brain Region :  primary motor, layer 5
Primary Cell Class :  principal cell
Secondary Cell Class :  pyramidal
Tertiary Cell Class :  Intratelencephalic (IT)
Original Format :  Vaa3D.swc
Experiment Protocol :  in vivo
Experimental Condition :  Control
Staining Method :  enhanced green fluorescent protein
Slicing Direction :  whole mount
Slice Thickness :  Not applicable
Tissue Shrinkage :  Not reported
Objective Type :  dry
Magnification :  40x
Reconstruction Method :  Vaa3D
Date of Deposition :  2020-04-03
Date of Upload :  2021-10-06
Persistence Vector :  L2_17543_3073_x3519_y3215.pvec
Note :  This reconstruction was obtained from the SEU-ALLEN Joint Center, and it is registered to the Common Coordinate Framework (CCF).

Reference Article
Related Article Reference :  Cellular Anatomy of the Mouse Primary Motor Cortex

Measurements
Soma Surface :  46.14 μm2
Number of Stems :  10
Number of Bifurcations :  78
Number of Branches :  166
Overall Width :  1800.99 μm
Overall Height :  1929.61 μm
Overall Depth :  1661.82 μm
Average Diameter :  2 μm
Total Length :  16464.8 μm
Total Surface :  103414 μm2
Total Volume :  51695.1 μm3
Max Euclidean Distance :  2325.48 μm
Max Path Distance :  2708.73 μm
Max Branch Order :  13
Average Contraction :  0.95
Total Fragmentation :  1769
Partition Asymmetry :  0.42
Average Rall's Ratio :  2.01
Average Bifurcation Angle Local :  79.07°
Average Bifurcation Angle Remote :  63.17°
Fractal Dimension :  1.01

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