8.6.79 - Released: 2025-04-16 - Content: 273841 cells
Morphology File (Standardized)
Morphology File (Original)
Log File (Standardized)
Log File (Original)



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NeuroMorpho.Org ID :  NMO_78045
Cell Name :  Im_Si_3
Archive Name :  Munoz-Cobo
Species Name :  mouse
Strain :  CD1
Structural Domains :  Dendrites, Soma, No Axon
Physical Integrity :  Dendrites Moderate
Morphological Attributes :  Diameter, 3D, Angles
Min Age :  17.5 days
Max Age :  17.5 days
Gender :  Male/Female
Min Weight :  Not reported
Max Weight :  Not reported
Development :  embryonic
Primary Brain Region :  hippocampus
Secondary Brain Region :  Not reported
Tertiary Brain Region :  Not reported
Primary Cell Class :  principal cell
Secondary Cell Class :  pyramidal
Tertiary Cell Class :  Not reported
Original Format :  Neuronstudio.swc
Experiment Protocol :  culture
Experimental Condition :  siTCERG1
Staining Method :  green fluorescent protein
Slicing Direction :  Sagittal
Slice Thickness :  0.5  μm
Tissue Shrinkage :  Not reported
Objective Type :  oil
Magnification :  20x
Reconstruction Method :  NeuronStudio
Date of Deposition :  2017-03-10
Date of Upload :  2017-11-28
Persistence Vector :  Im_Si_3.pvec

Reference Article
Related Article Reference :  Transcriptional Elongation Regulator 1 Affects Transcription and Splicing of Genes Associated with Cellular Morphology and Cytoskeleton Dynamics and IsRequired for Neurite Outgrowth in Neuroblastoma Cells and Primary NeuronalCultures.

Measurements
Soma Surface :  439.87 μm2
Number of Stems :  9
Number of Bifurcations :  158
Number of Branches :  325
Overall Width :  137.24 μm
Overall Height :  233.78 μm
Overall Depth :  4.67 μm
Average Diameter :  0.9 μm
Total Length :  1877.16 μm
Total Surface :  6309.8 μm2
Total Volume :  2781.77 μm3
Max Euclidean Distance :  142.12 μm
Max Path Distance :  168.42 μm
Max Branch Order :  22
Average Contraction :  0.96
Total Fragmentation :  2295
Partition Asymmetry :  0.67
Average Rall's Ratio :  4.52
Average Bifurcation Angle Local :  82.3°
Average Bifurcation Angle Remote :  76.86°
Fractal Dimension :  1.04

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