8.6.79 - Released: 2025-04-16 - Content: 273841 cells
Morphology File (Standardized)
Morphology File (Original)
Log File (Standardized)
Log File (Original)



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NeuroMorpho.Org ID :  NMO_01004
Cell Name :  IF1_190301
Archive Name :  Staiger
Species Name :  rat
Strain :  Wistar
Structural Domains :  Dendrites, Soma, Axon
Physical Integrity :  Dendrites & Axon Moderate
Morphological Attributes :  No Diameter, 3D, Angles
Min Age :  19.0 days
Max Age :  21.0 days
Gender :  Male
Min Weight :  Not reported
Max Weight :  Not reported
Development :  young
Primary Brain Region :  neocortex
Secondary Brain Region :  somatosensory
Tertiary Brain Region :  barrel, layer 4
Primary Cell Class :  principal cell
Secondary Cell Class :  pyramidal
Tertiary Cell Class :  Star
Original Format :  Neurolucida.asc
Experiment Protocol :  in vitro
Experimental Condition :  Control
Staining Method :  biocytin
Slicing Direction :  coronal
Slice Thickness :  100  μm
Tissue Shrinkage :  Reported (no values given)
Not corrected
Objective Type :  water
Magnification :  40x
Reconstruction Method :  Neurolucida
Date of Deposition :  2005-12-31
Date of Upload :  2006-09-02
Persistence Vector :  IF1_190301.pvec
Note :  When originally released, this reconstruction had been incompletely processed, and this issue was fixed in release 6.1 (May 2015). The pre-6.1 version of the processed file is available for download here.

Reference Article
Related Article Reference :  Functional diversity of layer IV spiny neurons in rat somatosensory cortex: quantitative morphology of electrophysiologically characterized and biocytin labeled cells.

Measurements
Soma Surface :  957.35 μm2
Number of Stems :  4
Number of Bifurcations :  85
Number of Branches :  174
Overall Width :  1033.88 μm
Overall Height :  1543.88 μm
Overall Depth :  48.09 μm
Average Diameter :  0.27 μm
Total Length :  20638.4 μm
Total Surface :  18096.9 μm2
Total Volume :  5883.94 μm3
Max Euclidean Distance :  1205.65 μm
Max Path Distance :  1557.26 μm
Max Branch Order :  12
Average Contraction :  0.89
Total Fragmentation :  6046
Partition Asymmetry :  0.56
Average Rall's Ratio :  1.79
Average Bifurcation Angle Local :  69.19°
Average Bifurcation Angle Remote :  64.81°
Fractal Dimension :  1.04

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