8.6.82 - Released: 2025-05-21 - Content: 275062 cells
Morphology File (Standardized)
Morphology File (Original)
Log File (Standardized)
Log File (Original)



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NeuroMorpho.Org ID :  NMO_159980
Cell Name :  Control19
Archive Name :  Zhan_Kipp
Species Name :  mouse
Strain :  C57BL/6J
Structural Domains :  Processes, Soma
Physical Integrity :  Processes Moderate
Morphological Attributes :  No Diameter, 3D, Angles
Min Age :  287.0 days
Max Age :  287.0 days
Gender :  Male
Min Weight :  Not reported
Max Weight :  Not reported
Development :  adult
Primary Brain Region :  neocortex
Secondary Brain Region :  anterior cingulate
Tertiary Brain Region :  layer 5
Primary Cell Class :  Glia
Secondary Cell Class :  microglia
Tertiary Cell Class :  Iba1-positive
Original Format :  Neurolucida.dat
Experiment Protocol :  in vitro
Experimental Condition :  Control
Staining Method :  immunostaining
Slicing Direction :  coronal
Slice Thickness :  5  μm
Tissue Shrinkage :  Not reported
Objective Type :  Not reported
Magnification :  Not reported
Reconstruction Method :  Neurolucida
Date of Deposition :  2021-07-02
Date of Upload :  2021-07-26
Persistence Vector :  Control19.pvec
Note :  Reconstructions were obtained from cortical layers 5-6 where microglial morphology should not be biased by the dense network of axonal bundles in the corpus callosum.

Reference Article
Related Article Reference :  Focal white matter lesions induce long-lasting axonal degeneration, neuroinflammation and behavioral deficits.

Measurements
Soma Surface :  76.83 μm2
Number of Stems :  1
Number of Bifurcations :  3
Number of Branches :  7
Overall Width :  8.13 μm
Overall Height :  10.36 μm
Overall Depth :  5.71 μm
Average Diameter :  0.51 μm
Total Length :  33.4 μm
Total Surface :  53.11 μm2
Total Volume :  7.05 μm3
Max Euclidean Distance :  12.16 μm
Max Path Distance :  20.5 μm
Max Branch Order :  3
Average Contraction :  0.85
Total Fragmentation :  38
Partition Asymmetry :  0.67
Average Rall's Ratio :  2
Average Bifurcation Angle Local :  84.23°
Average Bifurcation Angle Remote :  78.12°
Fractal Dimension :  1.09

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