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| Details about selected cell |
| NeuroMorpho.Org ID : | NMO_160937 |
| Cell Name : | Casp6_WT_Neuron_6 |
| Archive Name : | Sjostrom |
| Species Name : | mouse |
| Strain : | C57BL/6 |
| Structural Domains : | Dendrites, Soma, Axon |
| Physical Integrity : | Dendrites & Axon Moderate |
| Morphological Attributes : | No Diameter, 3D, Angles |
| Min Age : | 11.0 days
|
| Max Age : | 16.0 days
|
| Gender : |
Male/Female
|
| Min Weight : | Not reported
|
| Max Weight : | Not reported
|
| Development : | young |
| Primary Brain Region : | hippocampus |
| Secondary Brain Region : | CA1 |
| Tertiary Brain Region : | pyramidal layer |
| Primary Cell Class : | principal cell |
| Secondary Cell Class : | pyramidal |
| Tertiary Cell Class : | Not reported |
| Original Format : | Neuromantic.swc |
| Experiment Protocol : | in vitro |
| Experimental Condition : | recombinant human caspase-6 WT |
| Staining Method : | Alexa Fluor 594 |
| Slicing Direction : | custom |
| Slice Thickness : | 300
μm |
| Tissue Shrinkage : |
Not reported
|
| Objective Type : | water |
| Magnification : | 40x |
| Reconstruction Method : | Neuromantic |
| Date of Deposition : | 2021-07-20 |
| Date of Upload : | 2021-07-30 |
| Persistence Vector : | Casp6_WT_Neuron_6.pvec |
| Note : | Recombinant human caspase-6 WT was activated in Stennicke buffer at 37 Celsius degrees for 15 min and diluted to 10 pg/10 microL in internal solution with 30-60 micromolar Alexa 594 or 40-80 micromolar Alexa 488, and osmolarity double checked to be around 310 mOsm. |
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| Reference Article |
| Related Article Reference : | Rare CASP6N73T variant associated with hippocampal volume exhibits decreased proteolytic activity, synaptic transmission defect, and neurodegeneration. |
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|
| Measurements |
| Soma Surface : |
434.38 μm2 |
| Number of Stems : |
5 |
| Number of Bifurcations : |
65 |
| Number of Branches : |
135 |
| Overall Width : |
373.19 μm |
| Overall Height : |
1188.79 μm |
| Overall Depth : |
205.83 μm |
| Average Diameter : |
2.8 μm |
| Total Length : |
11403.5 μm |
| Total Surface : |
101514 μm2 |
| Total Volume : |
81542.7 μm3 |
| Max Euclidean Distance : |
1002.48 μm |
| Max Path Distance : |
1229.03 μm |
| Max Branch Order : |
22 |
| Average Contraction : |
0.92 |
| Total Fragmentation : |
2013 |
| Partition Asymmetry : |
0.56 |
| Average Rall's Ratio : |
1.83 |
| Average Bifurcation Angle Local : |
68.03° |
| Average Bifurcation Angle Remote : |
61.07° |
| Fractal Dimension : |
1.02 |
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