8.6.96 - Released: 2025-11-05 - Content: 284158 cells
Morphology File (Standardized)
Morphology File (Original)
Log File (Standardized)
Log File (Original)



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NeuroMorpho.Org ID :  NMO_159514
Cell Name :  AD1201-PL-L-651-fiber03
Archive Name :  Zhang_Jiang
Species Name :  mouse
Strain :  3 x Tg-AD
Structural Domains :  Dendrites, Soma, No Axon
Physical Integrity :  Dendrites Complete
Morphological Attributes :  No Diameter, 3D, Angles
Min Age :  12.0 months
Max Age :  12.0 months
Gender :  Male
Min Weight :  Not reported
Max Weight :  Not reported
Development :  adult
Primary Brain Region :  neocortex
Secondary Brain Region :  prefrontal
Tertiary Brain Region :  left
Primary Cell Class :  principal cell
Secondary Cell Class :  pyramidal
Tertiary Cell Class :  Not reported
Original Format :  Amira.swc
Experiment Protocol :  in vitro
Experimental Condition :  Control
Staining Method :  Golgi-Cox
Slicing Direction :  coronal
Slice Thickness :  50  μm
Tissue Shrinkage :  Not reported
Objective Type :  Not reported
Magnification :  40x
Reconstruction Method :  Amira
Date of Deposition :  2020-01-31
Date of Upload :  2021-07-16
Persistence Vector :  AD1201-PL-L-651-fiber03.pvec
Note :  A block size of 600 x 600 x 600 cubic micrometers was chosen in the brain for statistical analysis of the parameters of neuronal morphology. The position of the prefrontal cortex was located in the following stereotaxic coordinates: Bregma, 3.08; 1.54 mm.

Reference Article
Related Article Reference :  Dendritic complexity change in the triple transgenic mouse model of Alzheimer's disease.

Measurements
Soma Surface :  461.1 μm2
Number of Stems :  4
Number of Bifurcations :  4
Number of Branches :  12
Overall Width :  136.72 μm
Overall Height :  205.17 μm
Overall Depth :  36.12 μm
Average Diameter :  1.84 μm
Total Length :  762.81 μm
Total Surface :  4531.87 μm2
Total Volume :  2375.43 μm3
Max Euclidean Distance :  131.62 μm
Max Path Distance :  174.22 μm
Max Branch Order :  3
Average Contraction :  0.87
Total Fragmentation :  184
Partition Asymmetry :  0.5
Average Rall's Ratio :  1.74
Average Bifurcation Angle Local :  50.03°
Average Bifurcation Angle Remote :  70.11°
Fractal Dimension :  1.04

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