8.6.96 - Released: 2025-11-05 - Content: 284158 cells
Morphology File (Standardized)
Morphology File (Original)
Log File (Standardized)
Log File (Original)



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NeuroMorpho.Org ID :  NMO_159482
Cell Name :  AD0601-PL-R-4501-fiber09
Archive Name :  Zhang_Jiang
Species Name :  mouse
Strain :  3 x Tg-AD
Structural Domains :  Dendrites, Soma, No Axon
Physical Integrity :  Dendrites Complete
Morphological Attributes :  No Diameter, 3D, Angles
Min Age :  6.0 months
Max Age :  6.0 months
Gender :  Male
Min Weight :  Not reported
Max Weight :  Not reported
Development :  adult
Primary Brain Region :  neocortex
Secondary Brain Region :  prefrontal
Tertiary Brain Region :  right
Primary Cell Class :  principal cell
Secondary Cell Class :  pyramidal
Tertiary Cell Class :  Not reported
Original Format :  Amira.swc
Experiment Protocol :  in vitro
Experimental Condition :  Control
Staining Method :  Golgi-Cox
Slicing Direction :  coronal
Slice Thickness :  50  μm
Tissue Shrinkage :  Not reported
Objective Type :  Not reported
Magnification :  40x
Reconstruction Method :  Amira
Date of Deposition :  2020-01-31
Date of Upload :  2021-07-16
Persistence Vector :  AD0601-PL-R-4501-fiber09.pvec
Note :  A block size of 600 x 600 x 600 cubic micrometers was chosen in the brain for statistical analysis of the parameters of neuronal morphology. The position of the prefrontal cortex was located in the following stereotaxic coordinates: Bregma, 3.08; 1.54 mm.

Reference Article
Related Article Reference :  Dendritic complexity change in the triple transgenic mouse model of Alzheimer's disease.

Measurements
Soma Surface :  3067.96 μm2
Number of Stems :  4
Number of Bifurcations :  4
Number of Branches :  12
Overall Width :  187.51 μm
Overall Height :  456.56 μm
Overall Depth :  24.66 μm
Average Diameter :  2.19 μm
Total Length :  1023.16 μm
Total Surface :  7157.17 μm2
Total Volume :  4046.63 μm3
Max Euclidean Distance :  343.51 μm
Max Path Distance :  361.04 μm
Max Branch Order :  3
Average Contraction :  0.95
Total Fragmentation :  55
Partition Asymmetry :  0.5
Average Rall's Ratio :  28.05
Average Bifurcation Angle Local :  53.9°
Average Bifurcation Angle Remote :  54.35°
Fractal Dimension :  1.01

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