8.6.79 - Released: 2025-04-16 - Content: 273841 cells
Morphology File (Standardized)
Morphology File (Original)
Log File (Standardized)
Log File (Original)



3D Cell Viewer - Java, legacy
3D Cell Viewer - WebGL, novel
Animation
Similar Neurons
Details about selected cell
NeuroMorpho.Org ID :  NMO_121532
Cell Name :  AA0343
Archive Name :  MouseLight
Species Name :  mouse
Strain :  C57BL/6
Structural Domains :  Dendrites, Soma, Axon
Physical Integrity :  Dendrites Moderate, Axon Complete
Morphological Attributes :  No Diameter, 3D, Angles
Min Age :  2.0 months
Max Age :  2.0 months
Gender :  Female
Min Weight :  25 grams
Max Weight :  25 grams
Development :  adult
Primary Brain Region :  thalamus
Secondary Brain Region :  Not reported
Tertiary Brain Region :  Not reported
Primary Cell Class :  principal cell
Secondary Cell Class :  pyramidal
Tertiary Cell Class :  projection
Original Format :  Janelia Workstation-Large Volume Viewer.swc
Experiment Protocol :  in vivo
Experimental Condition :  Control
Staining Method :  enhanced green fluorescent protein
Slicing Direction :  coronal
Slice Thickness :  25  μm
Tissue Shrinkage :  Not reported
Objective Type :  oil
Magnification :  40x
Reconstruction Method :  Janelia Workstation-Large Volume Viewer
Date of Deposition :  2019-10-02
Date of Upload :  2019-12-13
Persistence Vector :  AA0343.pvec

Reference Article
Related Article Reference :  Reconstruction of 1000 Projection Neurons Reveals New Cell Types and Organization of Long-Range Connectivity in the Mouse Brain

Measurements
Soma Surface :  12.36 μm2
Number of Stems :  9
Number of Bifurcations :  531
Number of Branches :  1071
Overall Width :  2352.64 μm
Overall Height :  3019.18 μm
Overall Depth :  3333.32 μm
Average Diameter :  0.25 μm
Total Length :  110187 μm
Total Surface :  86540.5 μm2
Total Volume :  5408.78 μm3
Max Euclidean Distance :  4308.57 μm
Max Path Distance :  9223.25 μm
Max Branch Order :  36
Average Contraction :  0.95
Total Fragmentation :  4544
Partition Asymmetry :  0.58
Average Rall's Ratio :  2
Average Bifurcation Angle Local :  65.76°
Average Bifurcation Angle Remote :  61.49°
Fractal Dimension :  1.02

© Copyright 2006-2025   George Mason University All Rights Reserved.   Link Graphic to NIF website