8.6.79 - Released: 2025-04-16 - Content: 273841 cells
Morphology File (Standardized)
Morphology File (Original)
Log File (Standardized)
Log File (Original)



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NeuroMorpho.Org ID :  NMO_151260
Cell Name :  48-3
Archive Name :  Shimell
Species Name :  rat
Strain :  Sprague-Dawley
Structural Domains :  Dendrites, No Soma, No Axon
Physical Integrity :  Dendrites Moderate
Morphological Attributes :  No Diameter, 2D, Angles
Min Age :  18.0 days
Max Age :  18.0 days
Gender :  Male/Female
Min Weight :  Not reported
Max Weight :  Not reported
Development :  embryonic
Primary Brain Region :  hippocampus
Secondary Brain Region :  Not reported
Tertiary Brain Region :  Not reported
Primary Cell Class :  principal cell
Secondary Cell Class :  pyramidal
Tertiary Cell Class :  Not reported
Original Format :  NeuronJ.ndf
Experiment Protocol :  culture
Experimental Condition :  Control
Staining Method :  enhanced green fluorescent protein
Slicing Direction :  Not applicable
Slice Thickness :  Not applicable
Tissue Shrinkage :  Not reported
Objective Type :  oil
Magnification :  20x
Reconstruction Method :  NeuronJ
Date of Deposition :  2020-04-20
Date of Upload :  2021-02-25
Persistence Vector :  48-3.pvec
Note :  Hippocampal neurons were transfected at 10DIV with eGFP and Zdhhc9. For live-cell time-lapse imaging, neurons were imaged every 24 hr post-transfection until 13-14 DIV.

Reference Article
Related Article Reference :  The X-Linked Intellectual Disability Gene Zdhhc9 Is Essential for Dendrite Outgrowth and Inhibitory Synapse Formation.

Measurements
Soma Surface :  N/A
Number of Stems :  2
Number of Bifurcations :  15
Number of Branches :  32
Overall Width :  124.26 μm
Overall Height :  188.25 μm
Overall Depth :  0 μm
Average Diameter :  0.25 μm
Total Length :  883.18 μm
Total Surface :  693.65 μm2
Total Volume :  43.35 μm3
Max Euclidean Distance :  125.31 μm
Max Path Distance :  192.12 μm
Max Branch Order :  6
Average Contraction :  0.96
Total Fragmentation :  248
Partition Asymmetry :  0.39
Average Rall's Ratio :  2
Average Bifurcation Angle Local :  104.22°
Average Bifurcation Angle Remote :  95.03°
Fractal Dimension :  1.01

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