8.6.79 - Released: 2025-04-16 - Content: 273841 cells
Morphology File (Standardized)
Morphology File (Original)
Log File (Standardized)
Log File (Original)



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Details about selected cell
NeuroMorpho.Org ID :  NMO_77474
Cell Name :  297_Cyst1_3
Archive Name :  Koshy
Species Name :  mouse
Strain :  B6.Cg-Gt(ROSA)26Sortm6(CAG-ZsGreen1)Hze/J (JAX# 007906)
Structural Domains :  Dendrites, No Soma, No Axon
Physical Integrity :  Dendrites Moderate
Morphological Attributes :  Diameter, 3D, Angles
Min Age :  1.5 months
Max Age :  3.0 months
Gender :  Male/Female
Min Weight :  Not reported
Max Weight :  Not reported
Development :  adult
Primary Brain Region :  neocortex
Secondary Brain Region :  somatosensory
Tertiary Brain Region :  Not reported
Primary Cell Class :  principal cell
Secondary Cell Class :  Not reported
Tertiary Cell Class :  Not reported
Original Format :  Imaris.ims
Experiment Protocol :  in vivo
Experimental Condition :  Toxoplasma gondii infection
Staining Method :  Not reported
Slicing Direction :  coronal
Slice Thickness :  200  μm
Tissue Shrinkage :  Not reported
Objective Type :  oil
Magnification :  40x
Reconstruction Method :  Imaris
Date of Deposition :  2017-04-11
Date of Upload :  2017-11-28
Persistence Vector :  297_Cyst1_3.pvec

Reference Articles
Primary Article Reference :  Neurons are the Primary Target Cell for the Brain-Tropic Intracellular Parasite Toxoplasma gondii.
Secondary Article Reference :  3-D imaging and analysis of neurons infected in vivo with Toxoplasma gondii.

Measurements
Soma Surface :  N/A
Number of Stems :  2
Number of Bifurcations :  54
Number of Branches :  110
Overall Width :  146.72 μm
Overall Height :  207.43 μm
Overall Depth :  51.05 μm
Average Diameter :  0.77 μm
Total Length :  2343.95 μm
Total Surface :  5688.69 μm2
Total Volume :  1199.53 μm3
Max Euclidean Distance :  168.06 μm
Max Path Distance :  393.23 μm
Max Branch Order :  20
Average Contraction :  0.9
Total Fragmentation :  9959
Partition Asymmetry :  0.55
Average Rall's Ratio :  1.88
Average Bifurcation Angle Local :  75.43°
Average Bifurcation Angle Remote :  74.74°
Fractal Dimension :  1.04

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