8.6.79 - Released: 2025-04-16 - Content: 273841 cells
Morphology File (Standardized)
Morphology File (Original)
Log File (Standardized)
Log File (Original)



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NeuroMorpho.Org ID :  NMO_183962
Cell Name :  289CtrA-p40fem-sham-redCatD-greenChAT_c
Archive Name :  Northington
Species Name :  mouse
Strain :  C57BL/6
Structural Domains :  Dendrites, Soma, No Axon
Physical Integrity :  Dendrites Moderate
Morphological Attributes :  Diameter, 3D, Angles
Min Age :  40.0 days
Max Age :  40.0 days
Gender :  Female
Min Weight :  10 grams
Max Weight :  30 grams
Development :  young adult
Primary Brain Region :  basal forebrain
Secondary Brain Region :  nucleus basalis of Meynert
Tertiary Brain Region :  Not reported
Primary Cell Class :  principal cell
Secondary Cell Class :  cholinergic
Tertiary Cell Class :  magnocellular
Original Format :  Imaris.ims
Experiment Protocol :  in vivo
Experimental Condition :  Control
Staining Method :  Alexa Fluor 488
Slicing Direction :  coronal
Slice Thickness :  50  μm
Tissue Shrinkage :  Not reported
Objective Type :  Not reported
Magnification :  63x
Reconstruction Method :  Imaris
Date of Deposition :  2022-04-19
Date of Upload :  2022-05-26
Persistence Vector :  289CtrA-p40fem-sham-redCatD-greenChAT_c.pvec
Note :  Surfaces created based off of ChAT (Alexa Fluor 488) and Cathepsin D (Alexa Fluor 594). Filaments created based off of ChAT.

Reference Article
Related Article Reference :  Basal forebrain magnocellular cholinergic systems are damaged in mice following neonatal hypoxia-ischemia.

Measurements
Soma Surface :  441.08 μm2
Number of Stems :  5
Number of Bifurcations :  1
Number of Branches :  7
Overall Width :  40.7 μm
Overall Height :  64.72 μm
Overall Depth :  5.12 μm
Average Diameter :  1.16 μm
Total Length :  187.18 μm
Total Surface :  720.17 μm2
Total Volume :  254.18 μm3
Max Euclidean Distance :  43.45 μm
Max Path Distance :  48.47 μm
Max Branch Order :  1
Average Contraction :  0.92
Total Fragmentation :  411
Partition Asymmetry :  0
Average Rall's Ratio :  1.43
Average Bifurcation Angle Local :  87.42°
Average Bifurcation Angle Remote :  61.08°
Fractal Dimension :  1.02

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