8.6.82 - Released: 2025-05-21 - Content: 275062 cells
Morphology File (Standardized)
Morphology File (Original)
Log File (Standardized)
Log File (Original)



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Details about selected cell
NeuroMorpho.Org ID :  NMO_192021
Cell Name :  21_3_16Sholl_NC_4_2_sample13_SP8_2
Archive Name :  Calderon
Species Name :  mouse
Strain :  NexCre Rad21flox/flox
Structural Domains :  Dendrites, Soma, No Axon
Physical Integrity :  Dendrites Moderate
Morphological Attributes :  No Diameter, 3D, Angles
Min Age :  17.5 days
Max Age :  18.5 days
Gender :  Male/Female
Min Weight :  Not reported
Max Weight :  Not reported
Development :  embryonic
Primary Brain Region :  neocortex
Secondary Brain Region :  Not reported
Tertiary Brain Region :  Not reported
Primary Cell Class :  principal cell
Secondary Cell Class :  Not reported
Tertiary Cell Class :  Not reported
Original Format :  Imaris.ims
Experiment Protocol :  culture
Experimental Condition :  Conditional cohesin deletion
Staining Method :  immunostaining
Slicing Direction :  Not applicable
Slice Thickness :  Not applicable
Tissue Shrinkage :  Not reported
Objective Type :  dry
Magnification :  40x
Reconstruction Method :  Imaris
Date of Deposition :  2022-06-09
Date of Upload :  2022-07-01
Persistence Vector :  21_3_16Sholl_NC_4_2_sample13_SP8_2.pvec
Note :  This reconstruction was obtained after 14 days of in vitro culture.

Reference Article
Related Article Reference :  Cohesin-dependence of neuronal gene expression relates to chromatin loop length.

Measurements
Soma Surface :  95.03 μm2
Number of Stems :  4
Number of Bifurcations :  18
Number of Branches :  40
Overall Width :  196.19 μm
Overall Height :  305.6 μm
Overall Depth :  11.11 μm
Average Diameter :  1.19 μm
Total Length :  2030.74 μm
Total Surface :  7699.93 μm2
Total Volume :  2550.99 μm3
Max Euclidean Distance :  226.96 μm
Max Path Distance :  265.15 μm
Max Branch Order :  7
Average Contraction :  0.89
Total Fragmentation :  8808
Partition Asymmetry :  0.38
Average Rall's Ratio :  2.05
Average Bifurcation Angle Local :  82.65°
Average Bifurcation Angle Remote :  52.36°
Fractal Dimension :  1.03

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