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| Details about selected cell |
| NeuroMorpho.Org ID : | NMO_291146 |
| Cell Name : | 20220331_cell01 |
| Archive Name : | Sjostrom |
| Species Name : | mouse |
| Strain : | Emx1 cre/cre |
| Structural Domains : | Dendrites, Soma, Axon |
| Physical Integrity : | Dendrites Moderate, Axon Incomplete |
| Morphological Attributes : | No Diameter, 3D, Angles |
| Min Age : | 18.0 days
|
| Max Age : | 25.0 days
|
| Gender : |
Male/Female
|
| Min Weight : | Not reported
|
| Max Weight : | Not reported
|
| Development : | young adult |
| Primary Brain Region : | neocortex |
| Secondary Brain Region : | occipital |
| Tertiary Brain Region : | primary visual, layer 5 |
| Primary Cell Class : | principal cell |
| Secondary Cell Class : | pyramidal |
| Tertiary Cell Class : | Not reported |
| Original Format : | Neuromantic.swc |
| Experiment Protocol : | in vitro |
| Experimental Condition : | Control |
| Staining Method : | AAV + biocytin/streptavidin |
| Slicing Direction : | coronal |
| Slice Thickness : | 300
μm |
| Tissue Shrinkage : |
Not reported
|
| Objective Type : | dry |
| Magnification : | 20x |
| Reconstruction Method : | Neuromantic |
| Date of Deposition : | 2024-12-17 |
| Date of Upload : | 2025-01-23 |
| Persistence Vector : | 20220331_cell01.pvec |
| Note : | In the source tracings available under Morphology File (Original), layer 1 is on top and layer 6 is on the bottom |
|
|
| Reference Article |
| Related Article Reference : | Principles of visual cortex excitatory microcircuit organization |
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| Measurements |
| Soma Surface : |
2273.09 μm2 |
| Number of Stems : |
15 |
| Number of Bifurcations : |
70 |
| Number of Branches : |
155 |
| Overall Width : |
403.02 μm |
| Overall Height : |
781.21 μm |
| Overall Depth : |
60.66 μm |
| Average Diameter : |
2.9 μm |
| Total Length : |
8010.29 μm |
| Total Surface : |
74963.8 μm2 |
| Total Volume : |
61583.8 μm3 |
| Max Euclidean Distance : |
510.28 μm |
| Max Path Distance : |
667.59 μm |
| Max Branch Order : |
15 |
| Average Contraction : |
0.93 |
| Total Fragmentation : |
2010 |
| Partition Asymmetry : |
0.49 |
| Average Rall's Ratio : |
2.17 |
| Average Bifurcation Angle Local : |
69.8° |
| Average Bifurcation Angle Remote : |
65.01° |
| Fractal Dimension : |
1.02 |
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