8.6.82 - Released: 2025-05-21 - Content: 275062 cells
Morphology File (Standardized)
Morphology File (Original)
Log File (Standardized)
Log File (Original)



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NeuroMorpho.Org ID :  NMO_161382
Cell Name :  20191108_sample_1
Archive Name :  Tolias
Species Name :  mouse
Strain :  Vipr2-Cre;Ai9
Structural Domains :  Dendrites, Soma, No Axon
Physical Integrity :  Dendrites Complete
Morphological Attributes :  No Diameter, 3D, Angles
Min Age :  99.0 days
Max Age :  99.0 days
Gender :  Male/Female
Min Weight :  Not reported
Max Weight :  Not reported
Development :  adult
Primary Brain Region :  neocortex
Secondary Brain Region :  frontal
Tertiary Brain Region :  primary motor, layer 6
Primary Cell Class :  principal cell
Secondary Cell Class :  pyramidal
Tertiary Cell Class :  Excitatory, corticothalamic, Vasoactive intestinal peptide receptor 2 (VIPR2)-positive
Original Format :  Neurolucida.swc
Experiment Protocol :  in vitro
Experimental Condition :  Control
Staining Method :  biocytin
Slicing Direction :  coronal
Slice Thickness :  300  μm
Tissue Shrinkage :  Not reported
Objective Type :  oil
Magnification :  100x
Reconstruction Method :  Neurolucida
Date of Deposition :  2020-01-24
Date of Upload :  2021-08-05
Persistence Vector :  20191108_sample_1.pvec
Note :  Corticothalamic (CT) types were located in L6 and lower L5 and had mostly untufted apical dendrites. Exhibit lower inter-spike interval adaptation.

Reference Article
Related Article Reference :  Phenotypic variation of transcriptomic cell types in mouse motor cortex.

Measurements
Soma Surface :  480.17 μm2
Number of Stems :  9
Number of Bifurcations :  28
Number of Branches :  65
Overall Width :  122.17 μm
Overall Height :  469.12 μm
Overall Depth :  177.39 μm
Average Diameter :  0.52 μm
Total Length :  4379.23 μm
Total Surface :  7074.95 μm2
Total Volume :  1325.27 μm3
Max Euclidean Distance :  477.74 μm
Max Path Distance :  663.59 μm
Max Branch Order :  13
Average Contraction :  0.71
Total Fragmentation :  2846
Partition Asymmetry :  0.58
Average Rall's Ratio :  1.37
Average Bifurcation Angle Local :  77.95°
Average Bifurcation Angle Remote :  78.72°
Fractal Dimension :  1.09

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