8.6.82 - Released: 2025-05-21 - Content: 275062 cells
Morphology File (Standardized)
Morphology File (Original)
Log File (Standardized)
Log File (Original)



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NeuroMorpho.Org ID :  NMO_161508
Cell Name :  20190925_sample_5
Archive Name :  Tolias
Species Name :  mouse
Strain :  SST-cre;Ai9
Structural Domains :  Dendrites, Soma, Axon
Physical Integrity :  Dendrites Complete, Axon Moderate
Morphological Attributes :  No Diameter, 3D, Angles
Min Age :  129.0 days
Max Age :  129.0 days
Gender :  Male/Female
Min Weight :  Not reported
Max Weight :  Not reported
Development :  adult
Primary Brain Region :  neocortex
Secondary Brain Region :  frontal
Tertiary Brain Region :  primary motor, layer 5
Primary Cell Class :  interneuron
Secondary Cell Class :  Inhibitory
Tertiary Cell Class :  Medial Ganglionic Eminence (MGE)-derived, Somatostatin (SOM)-negative
Original Format :  Neurolucida.swc
Experiment Protocol :  in vitro
Experimental Condition :  Control
Staining Method :  biocytin
Slicing Direction :  coronal
Slice Thickness :  300  μm
Tissue Shrinkage :  Not reported
Objective Type :  oil
Magnification :  100x
Reconstruction Method :  Neurolucida
Date of Deposition :  2020-01-24
Date of Upload :  2021-08-05
Persistence Vector :  20190925_sample_5.pvec
Note :  L2/3. Lower AP width and higher firing rate than typical for the SOM subclass. Some cells have Martinotti, some -Basket cell morphology.

Reference Article
Related Article Reference :  Phenotypic variation of transcriptomic cell types in mouse motor cortex.

Measurements
Soma Surface :  552.67 μm2
Number of Stems :  9
Number of Bifurcations :  195
Number of Branches :  399
Overall Width :  352.63 μm
Overall Height :  369.25 μm
Overall Depth :  116.23 μm
Average Diameter :  0.19 μm
Total Length :  24313.3 μm
Total Surface :  13994.1 μm2
Total Volume :  1798.49 μm3
Max Euclidean Distance :  282.53 μm
Max Path Distance :  1168.95 μm
Max Branch Order :  30
Average Contraction :  0.72
Total Fragmentation :  7741
Partition Asymmetry :  0.48
Average Rall's Ratio :  1.82
Average Bifurcation Angle Local :  88.71°
Average Bifurcation Angle Remote :  81.49°
Fractal Dimension :  1.08

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