8.6.82 - Released: 2025-05-21 - Content: 275062 cells
Morphology File (Standardized)
Morphology File (Original)
Log File (Standardized)
Log File (Original)



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NeuroMorpho.Org ID :  NMO_161578
Cell Name :  20190628_sample_2
Archive Name :  Tolias
Species Name :  mouse
Strain :  SST-cre;Ai9
Structural Domains :  Dendrites, Soma, Axon
Physical Integrity :  Dendrites Complete, Axon Moderate
Morphological Attributes :  No Diameter, 3D, Angles
Min Age :  79.0 days
Max Age :  79.0 days
Gender :  Male/Female
Min Weight :  Not reported
Max Weight :  Not reported
Development :  adult
Primary Brain Region :  neocortex
Secondary Brain Region :  frontal
Tertiary Brain Region :  primary motor, layer 5
Primary Cell Class :  interneuron
Secondary Cell Class :  Parvalbumin (PV)-positive
Tertiary Cell Class :  Inhibitory, Fast-spiking, Medial Ganglionic Eminence (MGE)-derived, Somatostatin (SOM)-positive
Original Format :  Neurolucida.swc
Experiment Protocol :  in vitro
Experimental Condition :  Control
Staining Method :  biocytin
Slicing Direction :  coronal
Slice Thickness :  300  μm
Tissue Shrinkage :  Not reported
Objective Type :  oil
Magnification :  100x
Reconstruction Method :  Neurolucida
Date of Deposition :  2020-01-24
Date of Upload :  2021-08-05
Persistence Vector :  20190628_sample_2.pvec
Note :  Upper L5, fast-spiking. A variety of axonal morphologies, including some with large arborization, including some with large arborization with dense spherical shape.

Reference Article
Related Article Reference :  Phenotypic variation of transcriptomic cell types in mouse motor cortex.

Measurements
Soma Surface :  239.93 μm2
Number of Stems :  12
Number of Bifurcations :  283
Number of Branches :  578
Overall Width :  544.86 μm
Overall Height :  499.97 μm
Overall Depth :  218.62 μm
Average Diameter :  0.15 μm
Total Length :  31442.5 μm
Total Surface :  14639.2 μm2
Total Volume :  1534.51 μm3
Max Euclidean Distance :  431.61 μm
Max Path Distance :  739.18 μm
Max Branch Order :  23
Average Contraction :  0.8
Total Fragmentation :  11200
Partition Asymmetry :  0.6
Average Rall's Ratio :  1.69
Average Bifurcation Angle Local :  83.1°
Average Bifurcation Angle Remote :  76.98°
Fractal Dimension :  1.06

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