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| Details about selected cell |
| NeuroMorpho.Org ID : | NMO_161658 |
| Cell Name : | 20190617_sample_5 |
| Archive Name : | Tolias |
| Species Name : | mouse |
| Strain : | SST-cre;Ai9 |
| Structural Domains : | Dendrites, Soma, Axon |
| Physical Integrity : | Dendrites Complete, Axon Moderate |
| Morphological Attributes : | No Diameter, 3D, Angles |
| Min Age : | 180.0 days
|
| Max Age : | 180.0 days
|
| Gender : |
Male/Female
|
| Min Weight : | Not reported
|
| Max Weight : | Not reported
|
| Development : | adult |
| Primary Brain Region : | neocortex |
| Secondary Brain Region : | frontal |
| Tertiary Brain Region : | primary motor, layer 1 |
| Primary Cell Class : | interneuron |
| Secondary Cell Class : | Inhibitory |
| Tertiary Cell Class : | Cholecystokinin (CCK)-positive, Caudal Ganglionic Eminence (CGE)-derived, Somatostatin (SOM)-negative, Synuclein Gamma (Sncg) subclass |
| Original Format : | Neurolucida.swc |
| Experiment Protocol : | in vitro |
| Experimental Condition : | Control |
| Staining Method : | biocytin |
| Slicing Direction : | coronal |
| Slice Thickness : | 300
μm |
| Tissue Shrinkage : |
Not reported
|
| Objective Type : | oil |
| Magnification : | 100x |
| Reconstruction Method : | Neurolucida |
| Date of Deposition : | 2020-01-24 |
| Date of Upload : | 2021-08-05 |
| Persistence Vector : | 20190617_sample_5.pvec |
| Note : | The Sncg subclass (mostly VIP-negative and strongly CCK-positive). Found in all layers L1 to L6 (preferentially in the upper L2/3) with diverse morphologies; they mostly showed irregular firing, sometimes with a strong rebound. Several cells in the upper L2/3 had large axonal morphologies, likely corresponding to the "large CCK Basket cells" |
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| Reference Article |
| Related Article Reference : | Phenotypic variation of transcriptomic cell types in mouse motor cortex. |
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| Measurements |
| Soma Surface : |
862.15 μm2 |
| Number of Stems : |
7 |
| Number of Bifurcations : |
170 |
| Number of Branches : |
347 |
| Overall Width : |
243.11 μm |
| Overall Height : |
637.26 μm |
| Overall Depth : |
134.52 μm |
| Average Diameter : |
0.12 μm |
| Total Length : |
19347.9 μm |
| Total Surface : |
6921.64 μm2 |
| Total Volume : |
529.4 μm3 |
| Max Euclidean Distance : |
408.24 μm |
| Max Path Distance : |
845.43 μm |
| Max Branch Order : |
29 |
| Average Contraction : |
0.79 |
| Total Fragmentation : |
7558 |
| Partition Asymmetry : |
0.55 |
| Average Rall's Ratio : |
1.81 |
| Average Bifurcation Angle Local : |
88.46° |
| Average Bifurcation Angle Remote : |
85.06° |
| Fractal Dimension : |
1.06 |
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