8.6.82 - Released: 2025-05-21 - Content: 275062 cells
Morphology File (Standardized)
Morphology File (Original)
Log File (Standardized)
Log File (Original)



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NeuroMorpho.Org ID :  NMO_161801
Cell Name :  20190329_sample_5
Archive Name :  Tolias
Species Name :  mouse
Strain :  VIP-Cre;Ai9
Structural Domains :  Dendrites, Soma, No Axon
Physical Integrity :  Dendrites Complete
Morphological Attributes :  No Diameter, 3D, Angles
Min Age :  104.0 days
Max Age :  104.0 days
Gender :  Male/Female
Min Weight :  Not reported
Max Weight :  Not reported
Development :  adult
Primary Brain Region :  neocortex
Secondary Brain Region :  frontal
Tertiary Brain Region :  primary motor, layer 6
Primary Cell Class :  principal cell
Secondary Cell Class :  Excitatory
Tertiary Cell Class :  Corticothalamic (CT), Vasoactive Intestinal Peptide (VIP)-negative
Original Format :  Neurolucida.swc
Experiment Protocol :  in vitro
Experimental Condition :  Control
Staining Method :  biocytin
Slicing Direction :  coronal
Slice Thickness :  300  μm
Tissue Shrinkage :  Not reported
Objective Type :  oil
Magnification :  100x
Reconstruction Method :  Neurolucida
Date of Deposition :  2020-01-24
Date of Upload :  2021-08-05
Persistence Vector :  20190329_sample_5.pvec
Note :  Corticothalamic (CT) types were located in L6 and lower L5 and had mostly untufted apical dendrites. Exhibit lower inter-spike interval adaptation.

Reference Article
Related Article Reference :  Phenotypic variation of transcriptomic cell types in mouse motor cortex.

Measurements
Soma Surface :  332.36 μm2
Number of Stems :  7
Number of Bifurcations :  17
Number of Branches :  41
Overall Width :  194.09 μm
Overall Height :  197.08 μm
Overall Depth :  84.46 μm
Average Diameter :  0.54 μm
Total Length :  2479.87 μm
Total Surface :  4219.94 μm2
Total Volume :  846.94 μm3
Max Euclidean Distance :  223.34 μm
Max Path Distance :  281.47 μm
Max Branch Order :  5
Average Contraction :  0.78
Total Fragmentation :  1122
Partition Asymmetry :  0.33
Average Rall's Ratio :  1.33
Average Bifurcation Angle Local :  90.79°
Average Bifurcation Angle Remote :  72.19°
Fractal Dimension :  1.06

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