8.6.82 - Released: 2025-05-21 - Content: 275062 cells
Morphology File (Standardized)
Morphology File (Original)
Log File (Standardized)
Log File (Original)



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NeuroMorpho.Org ID :  NMO_161759
Cell Name :  20190326_sample_1
Archive Name :  Tolias
Species Name :  mouse
Strain :  VIP-Cre;Ai9
Structural Domains :  Dendrites, Soma, No Axon
Physical Integrity :  Dendrites Complete
Morphological Attributes :  No Diameter, 3D, Angles
Min Age :  101.0 days
Max Age :  101.0 days
Gender :  Male/Female
Min Weight :  Not reported
Max Weight :  Not reported
Development :  adult
Primary Brain Region :  neocortex
Secondary Brain Region :  frontal
Tertiary Brain Region :  primary motor, layer 6
Primary Cell Class :  principal cell
Secondary Cell Class :  pyramidal
Tertiary Cell Class :  corticothalamic, Vasoactive Intestinal Peptide (VIP)-negative
Original Format :  Neurolucida.swc
Experiment Protocol :  in vitro
Experimental Condition :  Control
Staining Method :  biocytin
Slicing Direction :  coronal
Slice Thickness :  300  μm
Tissue Shrinkage :  Not reported
Objective Type :  oil
Magnification :  100x
Reconstruction Method :  Neurolucida
Date of Deposition :  2020-01-24
Date of Upload :  2021-08-05
Persistence Vector :  20190326_sample_1.pvec
Note :  Corticothalamic (CT) types were located in L6 and lower L5 and had mostly untufted apical dendrites. Exhibit lower inter-spike interval adaptation.

Reference Article
Related Article Reference :  Phenotypic variation of transcriptomic cell types in mouse motor cortex.

Measurements
Soma Surface :  668.71 μm2
Number of Stems :  6
Number of Bifurcations :  15
Number of Branches :  36
Overall Width :  151.08 μm
Overall Height :  409.88 μm
Overall Depth :  68.73 μm
Average Diameter :  0.98 μm
Total Length :  2218.19 μm
Total Surface :  6601.84 μm2
Total Volume :  1687.51 μm3
Max Euclidean Distance :  359.47 μm
Max Path Distance :  443.15 μm
Max Branch Order :  7
Average Contraction :  0.81
Total Fragmentation :  215
Partition Asymmetry :  0.58
Average Rall's Ratio :  1.81
Average Bifurcation Angle Local :  102.27°
Average Bifurcation Angle Remote :  67.48°
Fractal Dimension :  1.03

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