8.6.82 - Released: 2025-05-21 - Content: 275062 cells
Morphology File (Standardized)
Morphology File (Original)
Log File (Standardized)
Log File (Original)



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NeuroMorpho.Org ID :  NMO_161798
Cell Name :  20190122_sample_3
Archive Name :  Tolias
Species Name :  mouse
Strain :  Pvalb-Cre;Ai9
Structural Domains :  Dendrites, Soma, Axon
Physical Integrity :  Dendrites Complete, Axon Moderate
Morphological Attributes :  No Diameter, 3D, Angles
Min Age :  65.0 days
Max Age :  65.0 days
Gender :  Male/Female
Min Weight :  Not reported
Max Weight :  Not reported
Development :  adult
Primary Brain Region :  neocortex
Secondary Brain Region :  frontal
Tertiary Brain Region :  primary motor, layer 5
Primary Cell Class :  interneuron
Secondary Cell Class :  Parvalbumin (PV)-positive
Tertiary Cell Class :  Inhibitory, Fast-spiking, Medial Ganglionic Eminence (MGE)-derived
Original Format :  Neurolucida.swc
Experiment Protocol :  in vitro
Experimental Condition :  Control
Staining Method :  biocytin
Slicing Direction :  coronal
Slice Thickness :  300  μm
Tissue Shrinkage :  Not reported
Objective Type :  oil
Magnification :  100x
Reconstruction Method :  Neurolucida
Date of Deposition :  2020-01-24
Date of Upload :  2021-08-05
Persistence Vector :  20190122_sample_3.pvec
Note :  Upper L5, fast-spiking. A variety of axonal morphologies, including some with large arborization, including some with large arborization with dense spherical shape.

Reference Article
Related Article Reference :  Phenotypic variation of transcriptomic cell types in mouse motor cortex.

Measurements
Soma Surface :  671.62 μm2
Number of Stems :  8
Number of Bifurcations :  163
Number of Branches :  334
Overall Width :  330.58 μm
Overall Height :  398.47 μm
Overall Depth :  102.67 μm
Average Diameter :  0.14 μm
Total Length :  16109.4 μm
Total Surface :  6968.68 μm2
Total Volume :  628.51 μm3
Max Euclidean Distance :  301.91 μm
Max Path Distance :  571.18 μm
Max Branch Order :  17
Average Contraction :  0.77
Total Fragmentation :  4327
Partition Asymmetry :  0.51
Average Rall's Ratio :  1.89
Average Bifurcation Angle Local :  83.4°
Average Bifurcation Angle Remote :  71.97°
Fractal Dimension :  1.06

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