8.6.79 - Released: 2025-04-16 - Content: 273841 cells
Morphology File (Standardized)
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Log File (Original)



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NeuroMorpho.Org ID :  NMO_282916
Cell Name :  20170819_BGUG_HuC_ltRFP_d7_F6
Archive Name :  Baier
Species Name :  zebrafish
Strain :  Gal4-s1013tET
Structural Domains :  Neurites, Soma
Physical Integrity :  Neurites Moderate
Morphological Attributes :  No Diameter, 3D, Angles
Min Age :  5.0 days
Max Age :  7.0 days
Gender :  Male/Female
Min Weight :  Not reported
Max Weight :  Not reported
Development :  larval
Primary Brain Region :  mesencephalon
Secondary Brain Region :  torus semicircularis
Tertiary Brain Region :  Not reported
Primary Cell Class :  principal cell
Secondary Cell Class :  Periventricular Projection Neurons (PVPN)
Tertiary Cell Class :  Dorsal thalamus-projecting, Medulla oblongata-projecting, Hypothalamus-projecting, Class 5, Nucleus Isthmi-projecting, Retina-projecting
Original Format :  neuTube.swc
Experiment Protocol :  in vivo
Experimental Condition :  Control
Staining Method :  green fluorescent protein
Slicing Direction :  whole mount
Slice Thickness :  Not applicable
Tissue Shrinkage :  Not reported
Objective Type :  electron microscopy
Magnification :  20x
Reconstruction Method :  neuTube
Date of Deposition :  2020-11-24
Date of Upload :  2024-04-30
Persistence Vector :  20170819_BGUG_HuC_ltRFP_d7_F6.pvec

Reference Article
Related Article Reference :  Topography of a Visuomotor Transformation.

Measurements
Soma Surface :  1453.71 μm2
Number of Stems :  1
Number of Bifurcations :  33
Number of Branches :  67
Overall Width :  66.37 μm
Overall Height :  394.87 μm
Overall Depth :  69.53 μm
Average Diameter :  3.29 μm
Total Length :  1397.16 μm
Total Surface :  15196.2 μm2
Total Volume :  14034.4 μm3
Max Euclidean Distance :  409.99 μm
Max Path Distance :  569.48 μm
Max Branch Order :  11
Average Contraction :  0.88
Total Fragmentation :  870
Partition Asymmetry :  0.61
Average Rall's Ratio :  2.15
Average Bifurcation Angle Local :  83.18°
Average Bifurcation Angle Remote :  74.97°
Fractal Dimension :  1.04

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