8.6.79 - Released: 2025-04-16 - Content: 273841 cells
Morphology File (Standardized)
Morphology File (Original)
Log File (Standardized)
Log File (Original)



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Details about selected cell
NeuroMorpho.Org ID :  NMO_282740
Cell Name :  20170303_BGUG_HuC_ltRFP_d7_F2_N1
Archive Name :  Baier
Species Name :  zebrafish
Strain :  Gal4-s1013tET
Structural Domains :  No Dendrites, Soma, Axon
Physical Integrity :  Axon Complete
Morphological Attributes :  No Diameter, 3D, Angles
Min Age :  5.0 days
Max Age :  7.0 days
Gender :  Male/Female
Min Weight :  Not reported
Max Weight :  Not reported
Development :  larval
Primary Brain Region :  mesencephalon
Secondary Brain Region :  tectum
Tertiary Brain Region :  periventricular layer
Primary Cell Class :  interneuron
Secondary Cell Class :  Not reported
Tertiary Cell Class :  Not reported
Original Format :  neuTube.swc
Experiment Protocol :  in vivo
Experimental Condition :  Control
Staining Method :  photo-activatable green fluorescent protein (pa-GFP)
Slicing Direction :  transverse
Slice Thickness :  0.01  μm
Tissue Shrinkage :  Not reported
Objective Type :  water
Magnification :  20x
Reconstruction Method :  neuTube
Date of Deposition :  2020-11-18
Date of Upload :  2024-04-30
Persistence Vector :  20170303_BGUG_HuC_ltRFP_d7_F2_N1.pvec
Note :  This reconstruction is classified as periventricular interneuron (PVIN) in the original publication.

Reference Article
Related Article Reference :  Retinotectal circuitry of larval zebrafish is adapted to detection and pursuit of prey.

Measurements
Soma Surface :  1157.67 μm2
Number of Stems :  1
Number of Bifurcations :  25
Number of Branches :  51
Overall Width :  17.7 μm
Overall Height :  117.78 μm
Overall Depth :  28.07 μm
Average Diameter :  3.5 μm
Total Length :  379.25 μm
Total Surface :  4235.29 μm2
Total Volume :  3871.07 μm3
Max Euclidean Distance :  121.01 μm
Max Path Distance :  157.22 μm
Max Branch Order :  12
Average Contraction :  0.9
Total Fragmentation :  251
Partition Asymmetry :  0.6
Average Rall's Ratio :  1.93
Average Bifurcation Angle Local :  84.41°
Average Bifurcation Angle Remote :  80.45°
Fractal Dimension :  1.07

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