8.6.79 - Released: 2025-04-16 - Content: 273841 cells
Morphology File (Standardized)
Morphology File (Original)
Log File (Standardized)
Log File (Original)



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Details about selected cell
NeuroMorpho.Org ID :  NMO_282965
Cell Name :  20161005_BGUG_HuC_ltRFP_d6_F11_N1
Archive Name :  Baier
Species Name :  zebrafish
Strain :  Gal4-s1013tET
Structural Domains :  No Dendrites, Soma, Axon
Physical Integrity :  Axon Complete
Morphological Attributes :  No Diameter, 3D, Angles
Min Age :  5.0 days
Max Age :  7.0 days
Gender :  Male/Female
Min Weight :  Not reported
Max Weight :  Not reported
Development :  larval
Primary Brain Region :  mesencephalon
Secondary Brain Region :  tectum
Tertiary Brain Region :  periventricular layer
Primary Cell Class :  interneuron
Secondary Cell Class :  Not reported
Tertiary Cell Class :  Not reported
Original Format :  neuTube.swc
Experiment Protocol :  in vivo
Experimental Condition :  Control
Staining Method :  photo-activatable green fluorescent protein (pa-GFP)
Slicing Direction :  transverse
Slice Thickness :  0.01  μm
Tissue Shrinkage :  Not reported
Objective Type :  water
Magnification :  20x
Reconstruction Method :  neuTube
Date of Deposition :  2020-11-18
Date of Upload :  2024-04-30
Persistence Vector :  20161005_BGUG_HuC_ltRFP_d6_F11_N1.pvec
Note :  This reconstruction is classified as periventricular interneuron (PVIN) in the original publication.

Reference Article
Related Article Reference :  Retinotectal circuitry of larval zebrafish is adapted to detection and pursuit of prey.

Measurements
Soma Surface :  282.62 μm2
Number of Stems :  1
Number of Bifurcations :  29
Number of Branches :  59
Overall Width :  48.92 μm
Overall Height :  106.8 μm
Overall Depth :  28 μm
Average Diameter :  4.43 μm
Total Length :  548.23 μm
Total Surface :  7856.99 μm2
Total Volume :  9451.09 μm3
Max Euclidean Distance :  112.09 μm
Max Path Distance :  171.9 μm
Max Branch Order :  10
Average Contraction :  0.92
Total Fragmentation :  289
Partition Asymmetry :  0.57
Average Rall's Ratio :  1.84
Average Bifurcation Angle Local :  84.14°
Average Bifurcation Angle Remote :  68.38°
Fractal Dimension :  1.06

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