8.6.82 - Released: 2025-05-21 - Content: 275062 cells
Morphology File (Standardized)
Morphology File (Original)
Log File (Standardized)
Log File (Original)



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NeuroMorpho.Org ID :  NMO_130607
Cell Name :  2016-24-08-slice-C-cell-7-rotated
Archive Name :  Tolias
Species Name :  mouse
Strain :  Not reported
Structural Domains :  Dendrites, Soma, Axon
Physical Integrity :  Dendrites & Axon Complete
Morphological Attributes :  Diameter, 3D, Angles
Min Age :  50.0 days
Max Age :  330.0 days
Gender :  Male/Female
Min Weight :  Not reported
Max Weight :  Not reported
Development :  adult
Primary Brain Region :  neocortex
Secondary Brain Region :  occipital
Tertiary Brain Region :  primary visual, layer 4
Primary Cell Class :  interneuron
Secondary Cell Class :  neurogliaform
Tertiary Cell Class :  Not reported
Original Format :  Neurolucida.swc
Experiment Protocol :  in vitro
Experimental Condition :  Control
Staining Method :  biocytin
Slicing Direction :  parasagittal
Slice Thickness :  300  μm
Tissue Shrinkage :  Reported 15%
Not corrected
Objective Type :  oil
Magnification :  100x
Reconstruction Method :  Neurolucida
Date of Deposition :  2020-03-16
Date of Upload :  2020-06-29
Persistence Vector :  2016-24-08-slice-C-cell-7-rotated.pvec
Note :  In the Morphology File (Original) version of the SWC files the z axis is to aligned with the normal towards the pia

Reference Article
Related Article Reference :  Layer 4 of mouse neocortex differs in cell types and circuit organization between sensory areas.

Measurements
Soma Surface :  619.27 μm2
Number of Stems :  4
Number of Bifurcations :  462
Number of Branches :  928
Overall Width :  467.58 μm
Overall Height :  312.93 μm
Overall Depth :  64.84 μm
Average Diameter :  0.11 μm
Total Length :  36120.8 μm
Total Surface :  12829.9 μm2
Total Volume :  1791.45 μm3
Max Euclidean Distance :  330.12 μm
Max Path Distance :  2477.08 μm
Max Branch Order :  75
Average Contraction :  0.76
Total Fragmentation :  45637
Partition Asymmetry :  0.59
Average Rall's Ratio :  2
Average Bifurcation Angle Local :  83.64°
Average Bifurcation Angle Remote :  74.78°
Fractal Dimension :  1.08

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